SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12471

Length: 2906 nt

UniGene Fasta

>sp_v3.0_unigene12471
AAGTTCCATGTCATGCATTTCATCTCTACACCCCCACTTCTTTAAAGGCCTCTCTGTTCCTGAAAAGTAGAATGTAGAGTGACCCTGGAATCCAATTGCAGTGCCATGGAGAACAGTTATAGTGGAACGTTAGAGCAGCCCTTGATTAATCCAGCAGCTACCACAACTCATGGCACATCGAGGAGCACTCTGACAGTCGTACTGCAATGGGTTCTATATATCATAATGTGGGTGCTGTTGATTTTGTGGATTGGCTTCATAGTTTTGTTTCCTACCACTTTCTTCCGTCAATTCTTGAACAAATTGTTCACCATAACTGGCAGCTCATTCATGGGATACTCAGGGAGCATGTTACTTCTTTATGGTGTTCCTGTTGTCATTATAGCATTACTGGGGATTCTCTACATTGAGATTTCTCCAAAGGAAGCTAACAAGAAGAAGAAATCCAATTCCCCCCGACTCGTTCATGGACATTTCCAGTACTTATAGTATGGACCCTTTGGGGTGGTTTCTGCTGCCGAACTATTTGTGATAATGCTGTTTGTCGTATACATTCTGGGGACAATGGCTGCATATCTTGTCAGTGACAGTAAAACAATTGATCAGATTAGAATGTCTTTGCCTGCATACGCAAAGAGTTTGGTAATGTTGGAACTTTCAGGACTTCGGCTTGGTTCAGTGGGACTTTTCTGTTTGGGTTTTCTTTTCCTTCCTGTGGCAAGGGGGTCAATGCTTTTACGCCTTATAGATATTCCATTTGAACATGCAACGAAATACCATGTGTGGCTGGGTCATGTAACAATGGCACTCTTTACTGCGCATGGGCTTTGTTATCTCTTAGCATGGGGACTAGAAGGCCGCTTCTTACATGAGGTGATTCAATGGCAACGCATTGGTATTGCAAATCTCCCTGGGGAGATAAGTCTTTGCGCTGGCTTGGCTATGTGGGTGACTTCGTTGCGCTTCGTACGAGAACAATATTTTGAACTCTTTTTCTACACACATCAGTTGTACATAGTTTTTGTAGTGTTCTTAGCATTACATGTGGGGGACTTTATATTCGCCATAGCAGCAGCAGGGATCTTTTTCTTCATACTTGACCGGTTTCTTAGATTCTGCCAGTCTCGAAGAGATGTTGATTTGCTGTCAGCAAGATGCCTTCCATGTGGAACAATCGAATTGGTTATATCAAAGCCGCCAAGTTTGTGCTACAATGCGTTGAGTTTCGTCTTTATCCAGATACGAAACTTATCTTGGCTACAATGGCACCCATTTAGTGTGTCATCCAGCCCATATGATGGTAGACAGCATTTATCAATTCTCATAAAGCCTCTTGGAAAATGGACACGTGAACTGAAGAATATTGTTTCAATGGCTGGGGAACAATCTCGACAACAGTTGGCAGTTGGATGTCCGTTTAAATTGAATGCTTCAGTTGAGGGTCCCTATGGGCATGCAAAAGATTATCACTTAAGTTATAGTAATCTGATTCTGGTTGCTGGTGGCATTGGAATTTCACCATTTGTGGCTATCTTGCGAGACCTCCTTCATCGTATTGAACAATGCCAGCTTGGTTTACCAAGAAATGTATTGCTGATTTGGGCAGTCAAAAAATCAAGAGAGCTTTACATACTCGACTTAGTTGACGCAGAATCAGTTTGTCCAGAATTTACTAACAAGATAAACCTTGAGGTCCAAGTCTATGTGACACAAGAATTAGAACCTGAATTGGAAAACGGAGGCGTTGTGAATGTAAATCACTCTTTATATAGCCCTGATATAAGAATAAAACCAATGTCAAGTTTAGTCGGGACAGGAAATAATATTTGGGCAGGGATCTACCTGGCTTCATCCATAGTTGGTTTTATCATAGCAATGGCACTGACAGATACATTCTACATCAATCATTATGAGAGTGCTCCTTGGTGGTTGAAAGGACTGTGTTTCATTCTCTGCATGGTTGTGGGTGTTGCTATTTTTGGTGGTGTGGCAATTTTTCTGTGGAATTTATGGGATTTCAAAATTTCTGGGTACCAGAAGAAAGTCGATGATAGATATGAATCAGACCAAACTGCACATACTTATAGTCAGCAAAATGTAGTTGTTGGCGCAGGAATGGAGAAATTGGTGAATCCTGGGAACACACATTATGGCTGTAGACCCAACTTCAAAGAAAGTTTCGGGAAAGTTTCAAATGAGTGGGGGAATGTTGATATTGGTGTTTTAGTATGTGGTCCCCAAAGTTTACAGGCAAGTGTAGCGAAGGAATGCAGGTCATACAACTTGAGAAACTCGACAAATAAAACTGTGTTTCATTTCAACAGTCATAGCTTTGATCTGTAATTAGCTAATTATAGGAGGGTCACTAGGACGTGGTGGTTCAAGTATATAGTCTTAGATATGCAAGTACATGGTTCCCTTGCTATTAATTTGGCCTTCTTCATGACTTGTCATGATAATGTAGGGCTCACTAAGGCCAAATTGTCTCATGGGACCTATACAAGTTAAATTCTGTGGAGTAATTGCCCCTATGTACATTAATAACCTTTTTTGCGAACTTTATACTTTGCTCAAGTGTCAGTTGACATTGACTGCAATAAATTACATAGAAAATGACTCTGAATGATTTATTAATCCATTTCTGTAATTATATGTCTAGAATGCTCAGCACAGCAAAAAATGTGTGTGCCGATATTGCCACATGACATGCATTTTCAACGTTGATGATTTACTGATAGGAAGTAACAAAGTATATCTTGGCAAGTTGTTTATGATCTAAACTATTATACATCTGCATTGTAAAGAGCATGTTGCTTTTGTACATTTCTCAGTGCAGACACAAGTGATGATGATCTTCTAGGGATTTCAATTATGATGATCTTCTAGGGATTTCAATTAAGATGAAT

Ace file of the UniGene sp_v3.0_unigene12471

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ferric reduction oxidase 7 [Arabidopsis thaliana] gb\|AAX92640.1\| FRO1-like protein [Arabidopsis thaliana] dbj\|BAE99139.1\| FRO1-like protein [Arabidopsis thaliana] gb\|AED95852.1\| ferric reduction oxidase 7 [Arabidopsis thaliana]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Ferric-chelate reductase, putative	-	-	1.235e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	NAD(P)H oxidase.	EC:1.6.3.1	-	5.276e-07	-

Source	Gene names
Sma3	0sFRO1; 0sFRO2; At5g49730; At5g49740; FRO1; GSVIVT00011355001; MtrDRAFT_AC151000g1v2; OSJNBa0011J08.12; OSJNBa0027P08.6; Os04g0444800; Os04g0578600; OsI_16048; OsJ_14936; PHYPADRAFT_162092; POPTRDRAFT_797250; RCOM_1299860; RCOM_1299890; RCOM_1543450; VITI

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ferric-chelate reductase activity	GO:0000293	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49740.1	ATFRO7, FRO7 ferric reduction oxidase 7 chr5:20205549-20208628 REVERSE LENGTH=747	51%
RefSeq	Arabidopsis thaliana	NP_199785.2	ferric reduction oxidase 7 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002299406.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: your sequence is longer than subject: 603 - 358

Fln protein: MLFVVYILGTMAAYLVSDSKTIDQIRMSLPAYAKSLVMLELSGLRLGSVGLFCLGFLFLPVARGSMLLRLIDIPFEHATKYHVWLGHVTMALFTAHGLCYLLAWGLEGRFLHEVIQWQRIGIANLPGEISLCAGLAMWVTSLRFVREQYFELFFYTHQLYIVFVVFLALHVGDFIFAIAAAGIFFFILDRFLRFCQSRRDVDLLSARCLPCGTIELVISKPPSLCYNALSFVFIQIRNLSWLQWHPFSVSSSPYDGRQHLSILIKPLGKWTRELKNIVSMAGEQSRQQLAVGCPFKLNASVEGPYGHAKDYHLSYSNLILVAGGIGISPFVAILRDLLHRIEQCQLGLPRNVLLIWAVKKSRELYILDLVDAESVCPEFTNKINLEVQVYVTQELEPELENGGVVNVNHSLYSPDIRIKPMSSLVGTGNNIWAGIYLASSIVGFIIAMALTDTFYINHYESAPWWLKGLCFILCMVVGVAIFGGVAIFLWNLWDFKISGYQKKVDDRYESDQTAHTYSQQNVVVGAGMEKLVNPGNTHYGCRPNFKESFGKVSNEWGNVDIGVLVCGPQSLQASVAKECRSYNLRNSTNKTVFHFNSHSFDL*

Protein Length: 604

Fln nts: AAGTTCCATGTCATGCATTTCATCTCTACACCCCCACTTCTTTAAAGGCCTCTCTGTTCCTGAAAAGTAGAATGTAGAGTGACCCTGGAATCCAATTGCAGTGCCATGGAGAACAGTTATAGTGGAACGTTAGAGCAGCCCTTGATTAATCCAGCAGCTACCACAACTCATGGCACATCGAGGAGCACTCTGACAGTCGTACTGCAATGGGTTCTATATATCATAATGTGGGTGCTGTTGATTTTGTGGATTGGCTTCATAGTTTTGTTTCCTACCACTTTCTTCCGTCAATTCTTGAACAAATTGTTCACCATAACTGGCAGCTCATTCATGGGATACTCAGGGAGCATGTTACTTCTTTATGGTGTTCCTGTTGTCATTATAGCATTACTGGGGATTCTCTACATTGAGATTTCTCCAAAGGAAGCTAACAAGAAGAAGAAATCCAATTCCCCCCGACTCGTTCATGGACATTTCCAGTACTTATAGTATGGACCCTTTGGGGTGGTTTCTGCTGCCGAACTATTTGTGATA_-_ATGCTGTTTGTCGTATACATTCTGGGGACAATGGCTGCATATCTTGTCAGTGACAGTAAAACAATTGATCAGATTAGAATGTCTTTGCCTGCATACGCAAAGAGTTTGGTAATGTTGGAACTTTCAGGACTTCGGCTTGGTTCAGTGGGACTTTTCTGTTTGGGTTTTCTTTTCCTTCCTGTGGCAAGGGGGTCAATGCTTTTACGCCTTATAGATATTCCATTTGAACATGCAACGAAATACCATGTGTGGCTGGGTCATGTAACAATGGCACTCTTTACTGCGCATGGGCTTTGTTATCTCTTAGCATGGGGACTAGAAGGCCGCTTCTTACATGAGGTGATTCAATGGCAACGCATTGGTATTGCAAATCTCCCTGGGGAGATAAGTCTTTGCGCTGGCTTGGCTATGTGGGTGACTTCGTTGCGCTTCGTACGAGAACAATATTTTGAACTCTTTTTCTACACACATCAGTTGTACATAGTTTTTGTAGTGTTCTTAGCATTACATGTGGGGGACTTTATATTCGCCATAGCAGCAGCAGGGATCTTTTTCTTCATACTTGACCGGTTTCTTAGATTCTGCCAGTCTCGAAGAGATGTTGATTTGCTGTCAGCAAGATGCCTTCCATGTGGAACAATCGAATTGGTTATATCAAAGCCGCCAAGTTTGTGCTACAATGCGTTGAGTTTCGTCTTTATCCAGATACGAAACTTATCTTGGCTACAATGGCACCCATTTAGTGTGTCATCCAGCCCATATGATGGTAGACAGCATTTATCAATTCTCATAAAGCCTCTTGGAAAATGGACACGTGAACTGAAGAATATTGTTTCAATGGCTGGGGAACAATCTCGACAACAGTTGGCAGTTGGATGTCCGTTTAAATTGAATGCTTCAGTTGAGGGTCCCTATGGGCATGCAAAAGATTATCACTTAAGTTATAGTAATCTGATTCTGGTTGCTGGTGGCATTGGAATTTCACCATTTGTGGCTATCTTGCGAGACCTCCTTCATCGTATTGAACAATGCCAGCTTGGTTTACCAAGAAATGTATTGCTGATTTGGGCAGTCAAAAAATCAAGAGAGCTTTACATACTCGACTTAGTTGACGCAGAATCAGTTTGTCCAGAATTTACTAACAAGATAAACCTTGAGGTCCAAGTCTATGTGACACAAGAATTAGAACCTGAATTGGAAAACGGAGGCGTTGTGAATGTAAATCACTCTTTATATAGCCCTGATATAAGAATAAAACCAATGTCAAGTTTAGTCGGGACAGGAAATAATATTTGGGCAGGGATCTACCTGGCTTCATCCATAGTTGGTTTTATCATAGCAATGGCACTGACAGATACATTCTACATCAATCATTATGAGAGTGCTCCTTGGTGGTTGAAAGGACTGTGTTTCATTCTCTGCATGGTTGTGGGTGTTGCTATTTTTGGTGGTGTGGCAATTTTTCTGTGGAATTTATGGGATTTCAAAATTTCTGGGTACCAGAAGAAAGTCGATGATAGATATGAATCAGACCAAACTGCACATACTTATAGTCAGCAAAATGTAGTTGTTGGCGCAGGAATGGAGAAATTGGTGAATCCTGGGAACACACATTATGGCTGTAGACCCAACTTCAAAGAAAGTTTCGGGAAAGTTTCAAATGAGTGGGGGAATGTTGATATTGGTGTTTTAGTATGTGGTCCCCAAAGTTTACAGGCAAGTGTAGCGAAGGAATGCAGGTCATACAACTTGAGAAACTCGACAAATAAAACTGTGTTTCATTTCAACAGTCATAGCTTTGATCTGTAA___TTAGCTAATTATAGGAGGGTCACTAGGACGTGGTGGTTCAAGTATATAGTCTTAGATATGCAAGTACATGGTTCCCTTGCTATTAATTTGGCCTTCTTCATGACTTGTCATGATAATGTAGGGCTCACTAAGGCCAAATTGTCTCATGGGACCTATACAAGTTAAATTCTGTGGAGTAATTGCCCCTATGTACATTAATAACCTTTTTTGCGAACTTTATACTTTGCTCAAGTGTCAGTTGACATTGACTGCAATAAATTACATAGAAAATGACTCTGAATGATTTATTAATCCATTTCTGTAATTATATGTCTAGAATGCTCAGCACAGCAAAAAATGTGTGTGCCGATATTGCCACATGACATGCATTTTCAACGTTGATGATTTACTGATAGGAAGTAACAAAGTATATCTTGGCAAGTTGTTTATGATCTAAACTATTATACATCTGCATTGTAAAGAGCATGTTGCTTTTGTACATTTCTCAGTGCAGACACAAGTGATGATGATCTTCTAGGGATTTCAATTATGATGATCTTCTAGGGATTTCAATTAAGATGAAT

Fln Alignment:

Contig12471___RDVDLLSARCLPCGTIELVISKPPSLCYNALSFVFIQIRNLSWLQWHPFSVSSSPYDGRQHLSILIKPLGKWTRELKNIVS------MAGE----QSRQQLAVGCPFKLNASVEGPYGHAKDYHLSYSNLILVAGGIGISPFVAILRDLLHRIE
D5ABF5_______________KPVQILKVAIYPGNVLTLHMSKPQGFRYKSGQYMFVNCPAVSSFEWHPFSITSAP--GDNYLSVHIRTLGDWTRELKNSFAEVCEPPMGGKSGLLRADYMQGKNNPRFPRLLIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDIVNHMK

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
167		66		33	0.997452
168			33	66	0.997452
169		66		33	0.997452
170	66	33			0.997452
211	16		83		0.994512
212	16			83	0.994512
214		83	16		0.994512
321	10	90			0.90298
324		90		10	0.90298
798	33			66	0.997452
827		85	14		0.993533
831	14		85		0.993533
834	85	14			0.993533
927	12			87	0.992554
928	12			87	0.992554
965	11			88	0.923564
966	11			88	0.923564
967		88		11	0.923564
1045		15		84	0.999986
1331	10	90			0.90298
1334	10	90			0.90298
1388	11			88	0.923564
1513	11		88		0.923564
1514	88	11			0.923564
1555	11		88		0.923564
1556		11		88	0.923564
1595	14		85		0.993533
1615	90			10	0.90298
1616	90		10		0.90298
1617			10	90	0.90298
1618		90	10		0.90298
1806		12		87	0.999964
2039			88	11	0.923564
2040	88			11	0.923564
2113	11	88			0.923564
2131	11			88	0.923564
2132		11	88		0.923564
2134	88			11	0.923564
2168		88	11		0.923564
2273	11	88			0.999952
2610	85			14	0.993533
2623		14	85		0.993533
2661		25	75		0.996473
2663	75			25	0.996473
2753	25		75		0.996473
2755	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain