SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12469

Length: 1133 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12469

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING zinc finger protein-like [Arabidopsis thaliana]	-	-	8.0e-08	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61460.1	BRH1 brassinosteroid-responsive RING-H2 chr3:22741701-22742213 REVERSE LENGTH=170	6.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_191705.1	brassinosteroid-responsive RING-H2 [Arabidopsis thaliana]	8.0e-11	50%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
340	20			80	0.995493
342			20	80	0.995493
343		80	20		0.995493
344	80		20		0.995493
372	80	20			0.995493
503		25		75	0.996473
511	25		75		0.996473
558		80		20	0.995493
559		80	20		0.995493
574	80		20		0.995493
577		80	20		0.995493
627	25	75			0.996473
654	25		75		0.996473
693	16		83		0.994512
719	25	75			0.996473
748		75		25	0.996473
799	14		85		0.993533
813		14	85		0.993533
827	83		16		0.994512
829		50	50		1.0
830	50			50	1.0
846		57		42	1.0
905		16	83		0.994512
913	83		16		0.994512
939		14	85		0.993533
960			42	57	1.0
1019	12	87			0.992554
1114	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain