SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12460

Length: 1132 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12460 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxidase [Populus nigra]	-	-	56%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	57%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; AT3G32980; AoPOX1; At1g44970; At2g18140; At2g18150; At2g38380; At2g38390; At3g32980; At3g49110; At3g49120; At3g50990; At4g08780; At4g36430; At5g05340; At5g06720; At5g06730; At5g19890; At5g58390; At5g58400; At5g66390; C7A10.930; CEVI-1; DIDI 6G-3B

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06720.1	ATPA2, PA2 peroxidase 2 chr5:2077567-2078857 REVERSE LENGTH=335	57%
RefSeq	Arabidopsis thaliana	NP_196290.1	peroxidase 53 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002304020.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q4W2V5

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 24 aas, your sequence is shorter than subject: 301 - 317

Fln protein: MSNRSLMFVSSLVLSFCAVTIKAQLTATFYQSSCPNVSTIVRGVVLKAIINETRVAASLLRLHFHDCFVNGCDGSILLDDNATFTGEKTAGPNNNSARGFEVIDAAKAALENACSQTVSCADIVAIAARDSVFLSGGPFWKVLLGRRDSTTANQTAANVGLPAPFDPVTTIIKKFTNVGLSATDVVPLSGGHTIGRARCTTFNNRLFDFNTTGSPDSTIDPTFLSDLQTLCPVTGDNNTLAALDRKSKDWFDNNYFKELKNNSGLLQSDQELYATDASTKSLVDTYISSQSTFFQDLLHP*

Protein Length: 302

Fln nts: TTGGCGAGTAAGTGAACAATCGCCCTCACTTGAGCTGTGGCGTACGAGCCATCAAATTTCCACTGGATTTGTTCTCTATAAATGAAACCCTAAAACCAACCAAATGTGGGACCCACCAAGAAACGACATTCAAGAAGAAGCAAATGCTGAGGGAAG_-_ATGAGTAACAGATCGTTGATGTTTGTGAGCTCTCTGGTATTGAGCTTCTGTGCAGTTACAATCAAGGCTCAGTTGACGGCTACTTTCTATCAGAGTTCGTGTCCAAACGTCTCAACTATTGTGCGAGGGGTCGTCCTGAAAGCAATAATTAACGAAACCCGAGTGGCCGCCTCTCTTCTCCGACTGCACTTCCATGATTGCTTCGTCAACGGTTGCGATGGGTCAATTCTGCTGGATGATAATGCTACATTTACGGGAGAAAAGACAGCCGGTCCTAATAATAATTCAGCACGAGGATTTGAGGTGATAGACGCCGCTAAGGCAGCTTTGGAAAACGCATGCTCCCAGACCGTGTCCTGCGCTGATATCGTCGCTATTGCAGCTCGCGACTCTGTGTTTCTAAGCGGAGGCCCATTCTGGAAAGTTCTCCTAGGGAGAAGGGATAGCACAACTGCCAACCAGACTGCGGCGAACGTGGGCCTTCCAGCACCCTTTGACCCAGTCACGACAATTATCAAGAAATTTACAAATGTCGGCCTCAGCGCTACAGATGTTGTACCACTCTCAGGAGGTCACACAATTGGGCGCGCCCGATGCACCACATTCAATAACCGCTTATTCGATTTCAATACTACCGGTAGCCCAGACTCGACCATTGATCCGACGTTCCTGTCCGATCTTCAAACCCTTTGCCCAGTAACAGGAGATAACAATACGCTGGCAGCTCTCGATAGAAAGTCCAAGGACTGGTTCGACAACAACTATTTCAAGGAGTTGAAGAATAATAGTGGGCTTCTACAGTCTGATCAAGAACTTTATGCCACCGATGCTTCAACCAAGTCTCTCGTAGACACTTACATCAGCAGTCAAAGTACCTTCTTTCAGGATTTGTTACATCCATGA___TAAGGATGGGAAGTATCAGCCCGCTCACTGGCACTGCTGGTCAGATTCGTACAAACTGCAGAGTTGTAAATTA

Fln Alignment:

Contig12460___QLTATFYQSSCPNVSTIVRGVVLKAIINETRVAASLLRLHFHDCFVNGCDGSILLDDNATFTGEKTAGPNNNSARGFEVIDAAKAALENACSQTVSCADIVAIAARDSVFLSGGPFWKVLLGRRDSTTANQTAANVGLPAPFDPVTTIIKKFTNVGLSATDVVPLSGGHTIGRARCTTFNNRLFDFNTTGSPDSTIDPTFLSDLQTLCPVTGDNNTLAALDRKSKDWFDNNYFKELKNNSGLLQSDQELYATDASTKSLVDTYISSQSTFFQD
Q4W2V5_______________QLTSTFYNKLCPTALSIVKAAVNKAVNNEKRMGASLLRLHFHDCFVNGCDGSILLDDNSTFTGEKTALPNANSVRGFDVIDTIKTQVEAACSGVVSCADILAIVARDSVVQLGGPTWTVLLGRRDSTTASLSAANNNIPSPASNLSALISSFTAHGLSTKDLVALSGGHTIGQARCTTFRARIYN-------ESNIDTSFATSVKSSCPSAGGDNTLSPLDLATPTTFDNKYYTDLGNRKGLLHSDQQLF-SGGSTNSQVTTYSANQNTFFTD

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1024		66	33	1.0
1025	33	66		1.0
1026		66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain