SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12457

Length: 1975 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene12457
CACAGCCCAGAATGCCCAAAAAGCATGCGGAAAAAGCAGCGGAAAAGACGAGCGGATCCAAAAATATTTCATGTACCCACTTATACAAAGCCACCAATGAGAAATCCCCATTTCACTAAATCCAGTATTGCAAGCGCCCACAAGCCCAGAACGGCATAAGCACTGACAAAGGATTTTAAGATCTGTGCGATGTGGGATATGGATTTGCCTTCCCAAGGGTCAAGTTTGAGTTCATCTGGTTCAGTTTGGACTGTACAACAGAACAAAATTTTTGAAAATGCTCTAGCTGATTTTGATAAAGACACCCCAGATAGATGGGAGAAAGTGGCAGCCAGGCTGCCTGGAAAAACTGCTACGGATGTTAGAAAGCATTATGAAGATCTCGTTGATGATGTTACTTGTATTGAAGCTGGCCGCGTTGCCCTACCCACGTACAGTAACTCTTCCTGTTCACTTGAGTGGTTAGCAGAAAAATCAGGCGCTCTGCACGGATTGAAGCAACAATTTGGCAGTGGTGGGAGGGGACCATCAACAAAGGCATCTGAACAGGAGAGAAAGAAGGGTGTTCCCTGGACTGAAGAAGAGCACAGGCAGTTTTTGATGGGCCTTCGCAAGTATGGCAAAGGCGACTGGAGAAGTATTTCTAGAAACTTTGTTGTGTCAAGGACACCAACCCAAGTGGCTAGCCATGCTCAAAAGTACTACATTCGGCTTGGTTCGGATAATAAAAACAAGAGAAGATCCAGCATACATGATATCACCACTGTCCATGGTACAGACAGGATGCCTTCTCCTTTACTGCACGTTTCTAATAGGCAGACTAATTCCCCCTCAACACAGGCAGAAATGAATCATTCACCATGTCTGACATATCCATCTCAGATTTCACGAGGACCTCTAATAAACTCTTTGGGACCTCAAATAGATGGTAACCTTCTATTGTCACCTCACTATCCTCTAAATCTGTATACGCAGAGAGGATTTGTGGGCCTTTCTCCAAGAACTATCATTCCTGATTCCTCTATAGCTATGCACCACTCAGGATATCCTGGGCAGTCTGCCATGCAATATTGATAAAAGGAAAGGGAGTGAACGAACAGGATCACCGTTGCATTCCTTTGCATTAATATGTCTAGTTCTAGGTCAAATGTGCAGTTAATTTTCTTCTTCTTTCTTCTCACTTTGAGAAAATTCTTGTGTCCTGTAAATATGCAAAGGATAGCAGAAGTGATGGGGTCAGCTTTTGTCATTTTTGCATATGGTTAGTTATGTTCTATATTTGTACACTAGTCCATATTTTGTACACTAGCAAACATCCGAATACTGGACTGCAGTTCTCTTTGTTGCTCCCTAAGCAGGCACTAGATAAAGAGCCAAGAAGTATTCATTAGATATATCTCAAGAATGAAAGCAAGTTGGCGAGGGTCTAGATGCAGGATGTTCTGGTTCACAAGATTTTCACTATACATCTGGTACTTCAGCTAGTGGGGGTCCATTACAGTATGGAAACTCTCAACATCATTCTACCACAGATGCAGTGATGTTGCATAATTCCTTCAGTCAGCTCAAGCGTGGTTGAGTTTAGTCACAGTATATTGGAGTTGCAGGTTCAGAAGTTAAGGGGTAGATAGAAACATGGACAGCTATATGAAAAAGGAATTCAGTCTGAACCTGCTTTGTCTTCACAAGTGAGCTGCGGCTCAAATAATTCTTTTTCCATGTATACAAAAAAGACCTTTGGTCCAGTGGCTTCTTCTCTATTAGCTGTGGCTCACAATTGTGGGGTGTATGGTACAATTTAAACTCAAGAGGTGTTTGTGGCATGTCACACTCTTTAGACTGATGGGCTTGGCTTGTAAGCGGCTGCTCTGCAGTTATCTTCTGTAATATCTTTATATGATGTTAGCGGTGGGAATAATTTTGTTTCTGGAATAACCTTGTTTATATGATAAATTGGTTTTGGAGTCCATCTTCC

Ace file of the UniGene sp_v3.0_unigene12457 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MYB transcription factor [Hevea brasiliensis]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	MYB transcription factor	-	-	1.067e-25	-

Source	Gene names
Sma3	1-3-1A; 1-3-1B; 24.t00021; 26.t00038; 40.t00014; AT1G19000; AT1G74840; At1g19000; At1g70000; At1g74840; At2g38090; At3g11280; At3g16350; At5g01200; At5g04760; At5g05790; At5g08520; At5g47390; At5g56840; At5g58900; At5g58900/k19m22_100; At5g61620; B1085F01

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38090.1	Duplicated homeodomain-like superfamily protein chr2:15945278-15946775 FORWARD LENGTH=298	59%
RefSeq	Arabidopsis thaliana	NP_181344.2	myb/SANT-like DNA-binding domain-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002314123.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg:

Fln protein: MWDMDLPSQGSSLSSSGSVWTVQQNKIFENALADFDKDTPDRWEKVAARLPGKTATDVRKHYEDLVDDVTCIEAGRVALPTYSNSSCSLEWLAEKSGALHGLKQQFGSGGRGPSTKASEQERKKGVPWTEEEHRQFLMGLRKYGKGDWRSISRNFVVSRTPTQVASHAQKYYIRLGSDNKNKRRSSIHDITTVHGTDRMPSPLLHVSNRQTNSPSTQAEMNHSPCLTYPSQISRGPLINSLGPQIDGNLLLSPHYPLNLYTQRGFVGLSPRTIIPDSSIAMHHSGYPGQSAMQY*

Protein Length: 296

Fln nts: CACAGCCCAGAATGCCCAAAAAGCATGCGGAAAAAGCAGCGGAAAAGACGAGCGGATCCAAAAATATTTCATGTACCCACTTATACAAAGCCACCAATGAGAAATCCCCATTTCACTAAATCCAGTATTGCAAGCGCCCACAAGCCCAGAACGGCATAAGCACTGACAAAGGATTTTAAGATCTGTGCG_-_ATGTGGGATATGGATTTGCCTTCCCAAGGGTCAAGTTTGAGTTCATCTGGTTCAGTTTGGACTGTACAACAGAACAAAATTTTTGAAAATGCTCTAGCTGATTTTGATAAAGACACCCCAGATAGATGGGAGAAAGTGGCAGCCAGGCTGCCTGGAAAAACTGCTACGGATGTTAGAAAGCATTATGAAGATCTCGTTGATGATGTTACTTGTATTGAAGCTGGCCGCGTTGCCCTACCCACGTACAGTAACTCTTCCTGTTCACTTGAGTGGTTAGCAGAAAAATCAGGCGCTCTGCACGGATTGAAGCAACAATTTGGCAGTGGTGGGAGGGGACCATCAACAAAGGCATCTGAACAGGAGAGAAAGAAGGGTGTTCCCTGGACTGAAGAAGAGCACAGGCAGTTTTTGATGGGCCTTCGCAAGTATGGCAAAGGCGACTGGAGAAGTATTTCTAGAAACTTTGTTGTGTCAAGGACACCAACCCAAGTGGCTAGCCATGCTCAAAAGTACTACATTCGGCTTGGTTCGGATAATAAAAACAAGAGAAGATCCAGCATACATGATATCACCACTGTCCATGGTACAGACAGGATGCCTTCTCCTTTACTGCACGTTTCTAATAGGCAGACTAATTCCCCCTCAACACAGGCAGAAATGAATCATTCACCATGTCTGACATATCCATCTCAGATTTCACGAGGACCTCTAATAAACTCTTTGGGACCTCAAATAGATGGTAACCTTCTATTGTCACCTCACTATCCTCTAAATCTGTATACGCAGAGAGGATTTGTGGGCCTTTCTCCAAGAACTATCATTCCTGATTCCTCTATAGCTATGCACCACTCAGGATATCCTGGGCAGTCTGCCATGCAATATTGA___TAAAAGGAAAGGGAGTGAACGAACAGGATCACCGTTGCATTCCTTTGCATTAATATGTCTAGTTCTAGGTCAAATGTGCAGTTAATTTTCTTCTTCTTTCTTCTCACTTTGAGAAAATTCTTGTGTCCTGTAAATATGCAAAGGATAGCAGAAGTGATGGGGTCAGCTTTTGTCATTTTTGCATATGGTTAGTTATGTTCTATATTTGTACACTAGTCCATATTTTGTACACTAGCAAACATCCGAATACTGGACTGCAGTTCTCTTTGTTGCTCCCTAAGCAGGCACTAGATAAAGAGCCAAGAAGTATTCATTAGATATATCTCAAGAATGAAAGCAAGTTGGCGAGGGTCTAGATGCAGGATGTTCTGGTTCACAAGATTTTCACTATACATCTGGTACTTCAGCTAGTGGGGGTCCATTACAGTATGGAAACTCTCAACATCATTCTACCACAGATGCAGTGATGTTGCATAATTCCTTCAGTCAGCTCAAGCGTGGTTGAGTTTAGTCACAGTATATTGGAGTTGCAGGTTCAGAAGTTAAGGGGTAGATAGAAACATGGACAGCTATATGAAAAAGGAATTCAGTCTGAACCTGCTTTGTCTTCACAAGTGAGCTGCGGCTCAAATAATTCTTTTTCCATGTATACAAAAAAGACCTTTGGTCCAGTGGCTTCTTCTCTATTAGCTGTGGCTCACAATTGTGGGGTGTATGGTACAATTTAAACTCAAGAGGTGTTTGTGGCATGTCACACTCTTTAGACTGATGGGCTTGGCTTGTAAGCGGCTGCTCTGCAGTTATCTTCTGTAATATCTTTATATGATGTTAGCGGTGGGAATAATTTTGTTTCTGGAATAACCTTGTTTATATGATAAATTGGTTTTGGAGTCCATCTTCC

Fln Alignment:

Contig12457___WTVQQNKIFENALADFDKDTPDRWEKVAARLPGKTATDVRKHYEDLVDDVTCIEAGRVALPTYSNSSCSL--EWLAEKSG----ALHGLKQQFGSGGRGPSTKASEQERKKGVPWTEEEHRQFLMGLRKYGKGDWRSISRNFVVSRTPTQVASHAQKYYIRLGSDNKNKRRSSIHDITTVHGTD--RMPSPLLHVSNRQTNSPSTQAEMNHSPCL--TYPSQISR---GPLINSLGPQI
B8LKB7_______________WSREQNKAFEMALAKHLEDTDDRWEKIASAVPGKSPAEVKRHYEILVEDIASIEAGRVPIPSYLDEVAEQADDGTAKKGGTHSSAYANLPSE--SNGTGKGTSKSDQERRKGIPWTEEEHRMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSPQGPITGQGNQSSGSAGQPANHVSQPGIPSVYGATVGQPIAGPMVSAVGTPV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
693	90		10		0.90298
695	90			10	0.90298
1313	11			88	0.923564
1314		11	88		0.923564
1316		88		11	0.923564
1317	88			11	0.923564
1320	85			14	0.993533
1338		83		16	0.994512
1408	20		80		0.995493
1441		20		80	0.999996
1449			80	20	0.999996
1452		80		20	0.999996
1465		11		88	0.923564
1466		22	66		0.999999
1470	88			11	0.923564
1483	75			25	1.0
1492			71	28	1.0
1517		66		33	1.0
1559			66	33	1.0
1570		83		16	0.994512
1571	83		16		0.994512
1572	83			16	0.994512
1577	83		16		0.994512
1578		16	83		0.994512
1579		16		83	0.994512
1582		83	16		0.994512
1583	83		16		0.994512
1586	83			16	0.994512
1589	33	50	16		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain