SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12421

Length: 4331 nt

UniGene Fasta

>sp_v3.0_unigene12421
GGGTTTCGTGAAGTTCTGGAAAGGAGGGCCTCTGGGCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGCTCATCCCCCCCCAGCTCATAGGAGGGATGTTTCTAGAGCCGAGGACGCTTTGGCTCTACCTTATGGGACTGACTCAGTAGGCATGCAGCGGGACTGGAATGAGGAGTTACAGTCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTTTTTAAGGTAAGCTGCGATTTTGTTGACGCAGCAGTAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCATATGTATGTTCATAACAACATATTCTTTAGCTTTGCTGTTGATGCCGACTTCGCACAAATGCAGCAGTTGTATGAGCAGGGTACAAAGGTGGACCGTGCTAGGCCATCGGCGAAGGTTGAAGGTGCTGCATGCAATTGTTTATTGGATAAAGCTGAAAGTCCAAAATCTGAAGTCTTATCAGATCAAAAAGATTTAGACGGCCAAATAGATGTGGCTAAGGAGCCTACAAGTGAACATTCAGGACTGGAAATCCTAGAGAAGGAAAAAGAAGTTTGTTCTGTGGTGGGTGGAAATTCTATAGAGAATGATGCTTCACAAATAACTGACAATGAGCAGGCAACCTATGCATCAGCAAATAATGACTTAAAGGGAACAAAGGCATACAATACTGCAGATATTCCAGGACTTTACACTTTAGCTATGGCAATTGTTGATTACAGAGGCCACAGGGTTGTTGCACAGAGCATAATTCCGGGGATCCTGCAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAAAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATGTAAAGGAGCATGAGGTGCTTGATGGATCTTCCAATAGAGTGAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACGACTGCAAGGGATGCAAACTATGTAGGTCCAGGGTCACGTTACTGTGTCTTAAGGCCTGAACTTGTTGCTGCCTTTTGCCAGGTTGAAGGTGAAGAAAGATTAAAGAAGGACATTCAGCAAGAGGCCACTGAAGGTTCTGCTTCGCAGCAAGAAGCCCCAGAAGTACTTCTTAACCCCAATGTTTTGACTGACTTTAAGCTGGCTGGTGACCCTGAGGAAATAACTGCTGATGAATCATTGGTAAAGAAGGCAGGGACATATCTTGTGGATATTGTTCTTCCCAAGTTTGTGCAGGATCTCAGTAGTCTGGAAGTTTCACCAATGGATGGGCAGACTCTAACTGAGGCACTGCATGCTCATGGTATCAATATGCGCTACATTGGTAAAGTGGCAAATATGGCAAAGCATTTGCCCCACATTTTGGATCTTTGTATTATTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATAGCACACTTCTTCAATTGTTTTCTTGGTCATGATGTACCTGTTGGCTCGAAAATTGGAGGTGCATCAACTGGAGACAAGTCTAGGAAGAAAGGAAAAGGTGGGCAATCAAAAAAGGCATCGAACCAGTTTTCTTCTGGAGCAGATAATGCTTCAAAACCACCAGGAGGTGTTTCTGCTAAAGATAATAGGAATCCTTTGCAAGTTAAAAATGTTGGACAAACTCAAGCATCATATCTGTGTATAACCTCGGAACTTGTCTGGATTGATATCCAGGAGTGTGTCAAATTCAAGTATCAGTTTGAACTACCTGAAGACGTGAAAACAATAGTGAAGAAGATGTCAACCTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGAAATATGATCTTAATGCGGAGGCTCCATTCAAAACATCGGACATATTGGACATGCATGCAGTGGCAAAGCACTCTGCTCCTGTTTGTGCCGATGCTCGTGATCTTATAGAAACTGGGAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAGCGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTCTACCATGGATTGAACCAAACGGAGCTTGCATTGCGGCATATGGCTCGCACATTGCTTTTACTAAATGTTTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGATATAGGAAGGATGAATGTAGCACTGCGTTATCTCCAAGAAGCCTTGAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAGACAGCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTATAAGCTATCCCTTCAGCATGAACGGAGCACATACAATATTTTGGCAAAACAGCTTGGTGAAGATGATTCAAGGACTCGGGACTCAGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGCACAGAAGCAAAAAGGACAGGCAGTGGATGCAGTTACTGCTCAAAAAGCCGTGGATGCTCTGAAGGCTCGTCCTGATTTGATTCAGGCTTTTCAGATGGCAACTGGAGGAGCTGCCGCAGTTCGTCCACGTGCCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATCGGTGATGTGCTTCCTAGAGGTAGGGGAATGGATGAACGTGGAGCACGAGCAGCAGCTGAGGTTCGTAAGAAAGCTGCTGCCAGAGGCCTTAATGTTCGTCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCTCACCAAGTGATTCTCCTTCAACATCTGCTCAGGATGCAGGCATTGGGAACAGTACAAATGCTGCGAATGAAGTAGAAGATACAATCGTTTGTGGGGAAGGAACTAGTGGAAATGCATCGTTGGAGAATACAGAAGAAAAAACTCCACTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAGAAGCAAAAGGCAAAGCCAAATGTTACAGCAGAATGCTAAGGTGCTTGGGAATGCAAATAGTATTGAAATTCAGTTCGAAGTTAAAAATAATTTTATGATCAGTTGTTACTATTCTGGGGTCAGGAAAATTAATAGAAGGATGTGGTGTTTCGTTCGTCAAGGAGTGCCCCTCAGTTTTGCAGCGCAGTAGCAAGGGTTGCCAATCCTAATAGTGAGATTTTAATTCTTTTCTCAGACGGGGAGAGGGGGTTATTGAAGTAGTTTTCTCATTCATGTAGAGAAGACAACTTAGTGTCCACCAGTCTTGGTGTTATTGCAGGCAATAAGTCAGATTGTAATTCAGAAAATAGGAGCGAAGTAATGCTAAAGGATGTTGGCTGAAGCTAGAATTTTGCAATTTAAAAAGTATTAAGCTGAATTCTGTCCCATTTGGATCCTCCCTTCTGTATCTTTTATTTCATTTGATCAAAAGGTAATCTAATATTTAATCTCAGGGATTGCATTAAGATGTCAATGCAGACGATGTTTACCAGGACCTTTAACTAAATGTATTTATTGATTTGTAATTTCAAAAGTTTGGATAGGACCCACATTTTCAGAGGTGAGGTTATAAGCCCTGGCAAAGCAAGGATAGTTGCTGGGTTACCAACAATTTGTACTATTTAGATTGTAGCATGACATGCTCTGAGTATGCAGTCAGATTTGCCTCATGGCCATCTTCACATTCTTTTTAACGAAAGAGGAAAAGCCAGGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTATGGGAGCAATTACAGCAATAGGTGTTCATGTCGATTTCTAGACAATTTAATAGCCATTTCATATTACACTTTGTTTATGAAAGTTTGCAGCTGGAAATACCAAATTATGTAGATAGATATCTAGAATATTAGTAGTTAGCCATTTTTGTACTGACTACAGTACAGAGGAGAATGACTATGTAAGTATTGATTTGTATTTAGATGATGCAATAAACAAAGAAGATAACTCAGTGACTTTTGGT

Ace file of the UniGene sp_v3.0_unigene12421

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12807, eIF3_p135, Translation initiation factor eIF3 subunit 135	-	-	0.0	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Eukaryotic translation initiation factor 3 subunit, putative	-	-	5.076e-07	-

Source	Gene names
Sma3	AT4g28080; B1123E10.126; F4F15.250; F6F3.12; F9L1.23; GSVIVT00000279001; GSVIVT00004706001; GSVIVT00008853001; GSVIVT00027051001; GSVIVT00037321001; H0811D08.1; OJ1191_G08.42; OJ2056_H01.14; OSJNBa0070O11.2; OSJNBa0084P08.1; Os02g0717400; Os04g0645100; Os

Source	GOs	Term	Type	e value	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52140.4	-	56%
RefSeq	Arabidopsis thaliana	NP_001190066.1	tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002298448.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY1

Fln msg: Overlapping hits, possible frame ERROR between 3436 and 3433, and overlapping frame ERROR between 3528 and 3525,

Fln protein: MLQQNAKVLGNANSIEIQFEVKNNFMISCYYSGVRKINxxxVVFRSSRSAPQFCSAVARVANPNSEILxxxxRRGEGVIEVVFSFM*

Protein Length: 88

Fln nts: GGGTTTCGTGAAGTTCTGGAAAGGAGGGCCTCTGGGCATCCTTTTGAAAATGTACCAAGTTTGTTGCCACTGAATCCATGGCTTGGTGCTCATCCCCCCCCAGCTCATAGGAGGGATGTTTCTAGAGCCGAGGACGCTTTGGCTCTACCTTATGGGACTGACTCAGTAGGCATGCAGCGGGACTGGAATGAGGAGTTACAGTCATGTAGGGAATTTCCTCGTAAATCTCTTCAAGACAGGATTCTGCGTGATAGGGCTCTTTTTAAGGTAAGCTGCGATTTTGTTGACGCAGCAGTAAAAGGTGCCAAGGGTGTCATTAATAGATGCATACCACCAATCAACCCTACAGACCCTGAACGATTTCATATGTATGTTCATAACAACATATTCTTTAGCTTTGCTGTTGATGCCGACTTCGCACAAATGCAGCAGTTGTATGAGCAGGGTACAAAGGTGGACCGTGCTAGGCCATCGGCGAAGGTTGAAGGTGCTGCATGCAATTGTTTATTGGATAAAGCTGAAAGTCCAAAATCTGAAGTCTTATCAGATCAAAAAGATTTAGACGGCCAAATAGATGTGGCTAAGGAGCCTACAAGTGAACATTCAGGACTGGAAATCCTAGAGAAGGAAAAAGAAGTTTGTTCTGTGGTGGGTGGAAATTCTATAGAGAATGATGCTTCACAAATAACTGACAATGAGCAGGCAACCTATGCATCAGCAAATAATGACTTAAAGGGAACAAAGGCATACAATACTGCAGATATTCCAGGACTTTACACTTTAGCTATGGCAATTGTTGATTACAGAGGCCACAGGGTTGTTGCACAGAGCATAATTCCGGGGATCCTGCAAGGTGATAAGTCTGACTCTCTTCTCTATGGTTCTGTTGACAACGGCAAAAAGATATGCTGGAATGATAAATTCCATGCAAAGGTCTTGGAAGCTGCAAAGTTACTTCATGTAAAGGAGCATGAGGTGCTTGATGGATCTTCCAATAGAGTGAAAATGGCTGCTCCTGTGGAATGCAAGGGTATTGTTGGTAGTGATGATAGACATTATCTGCTAGATTTAATGAGAACGACTGCAAGGGATGCAAACTATGTAGGTCCAGGGTCACGTTACTGTGTCTTAAGGCCTGAACTTGTTGCTGCCTTTTGCCAGGTTGAAGGTGAAGAAAGATTAAAGAAGGACATTCAGCAAGAGGCCACTGAAGGTTCTGCTTCGCAGCAAGAAGCCCCAGAAGTACTTCTTAACCCCAATGTTTTGACTGACTTTAAGCTGGCTGGTGACCCTGAGGAAATAACTGCTGATGAATCATTGGTAAAGAAGGCAGGGACATATCTTGTGGATATTGTTCTTCCCAAGTTTGTGCAGGATCTCAGTAGTCTGGAAGTTTCACCAATGGATGGGCAGACTCTAACTGAGGCACTGCATGCTCATGGTATCAATATGCGCTACATTGGTAAAGTGGCAAATATGGCAAAGCATTTGCCCCACATTTTGGATCTTTGTATTATTGAAATGGTTGTCAGGGCTGCAAAACATGTTTTGAAGGGTGTTCTAAGGGAAACCCAAGATCATGATCTGGGAGGTGCTATAGCACACTTCTTCAATTGTTTTCTTGGTCATGATGTACCTGTTGGCTCGAAAATTGGAGGTGCATCAACTGGAGACAAGTCTAGGAAGAAAGGAAAAGGTGGGCAATCAAAAAAGGCATCGAACCAGTTTTCTTCTGGAGCAGATAATGCTTCAAAACCACCAGGAGGTGTTTCTGCTAAAGATAATAGGAATCCTTTGCAAGTTAAAAATGTTGGACAAACTCAAGCATCATATCTGTGTATAACCTCGGAACTTGTCTGGATTGATATCCAGGAGTGTGTCAAATTCAAGTATCAGTTTGAACTACCTGAAGACGTGAAAACAATAGTGAAGAAGATGTCAACCTTCCGCAATCTTTGCCAAAAGGTTGGTTTAACTATTGCTGCACGGAAATATGATCTTAATGCGGAGGCTCCATTCAAAACATCGGACATATTGGACATGCATGCAGTGGCAAAGCACTCTGCTCCTGTTTGTGCCGATGCTCGTGATCTTATAGAAACTGGGAAACTTCAGTTAGCAGAGGGGAGGCTTAATGAGGCATATGAGTTGTTCTCTGAAGCATTTGCAATTCTCCAACAGGTTTCTGGTCCTATGCATCGAGAGGTGGCAAATTGTTGCCGATATCTTGCAATGGTTTTATATCATGCTGGAGACATGGCAGGAGCAATAATGCAGCAGCACAAAGAGCTTATCATAAATGAGCGATGCCTTGGTCTGGATCATCCTGATACAGCACACAGCTATGGTAACATGGCACTTTTCTACCATGGATTGAACCAAACGGAGCTTGCATTGCGGCATATGGCTCGCACATTGCTTTTACTAAATGTTTCATGTGGGCCTGATCATCCAGATGTTGCTGCAACATTCATTAATATTGCTATGATGTACCAGGATATAGGAAGGATGAATGTAGCACTGCGTTATCTCCAAGAAGCCTTGAAAAAGAATGAACGACTTCTTGGACATGACCATATTCAGACAGCTGTTTGTTATCATGCCCTTGCAATTGCCTTCAATTGCATGGGTGCTTATAAGCTATCCCTTCAGCATGAACGGAGCACATACAATATTTTGGCAAAACAGCTTGGTGAAGATGATTCAAGGACTCGGGACTCAGCAAACTGGATCAAGACTTTTCAGTTCCGTGATGCACAGGCACAGAAGCAAAAAGGACAGGCAGTGGATGCAGTTACTGCTCAAAAAGCCGTGGATGCTCTGAAGGCTCGTCCTGATTTGATTCAGGCTTTTCAGATGGCAACTGGAGGAGCTGCCGCAGTTCGTCCACGTGCCTCCCTTAACAAATCTGCAGCTGCAGCTGCCCTGATCGGTGATGTGCTTCCTAGAGGTAGGGGAATGGATGAACGTGGAGCACGAGCAGCAGCTGAGGTTCGTAAGAAAGCTGCTGCCAGAGGCCTTAATGTTCGTCCACAAAGTGTCCCTGTACAGGCCTTGCCAGTACAGTTGACTGAACTGTTAAATTTAATCAATGCTGGTGTGCCAAGCAAAGCCTCACCAAGTGATTCTCCTTCAACATCTGCTCAGGATGCAGGCATTGGGAACAGTACAAATGCTGCGAATGAAGTAGAAGATACAATCGTTTGTGGGGAAGGAACTAGTGGAAATGCATCGTTGGAGAATACAGAAGAAAAAACTCCACTGGGATTGGGTGCAGGTCTAACTTTAGATAATAAGAAGCAAAAGGCAAAGCCAA_-_ATGTTACAGCAGAATGCTAAGGTGCTTGGGAATGCAAATAGTATTGAAATTCAGTTCGAAGTTAAAAATAATTTTATGATCAGTTGTTACTATTCTGGGGTCAGGAAAATTAATxxxxxxxxxGTGGTGTTTCGTTCGTCAAGGAGTGCCCCTCAGTTTTGCAGCGCAGTAGCAAGGGTTGCCAATCCTAATAGTGAGATTTTAATxxxxxxxxxCAGACGGGGAGAGGGGGTTATTGAAGTAGTTTTCTCATTCATGTAG___AGAAGACAACTTAGTGTCCACCAGTCTTGGTGTTATTGCAGGCAATAAGTCAGATTGTAATTCAGAAAATAGGAGCGAAGTAATGCTAAAGGATGTTGGCTGAAGCTAGAATTTTGCAATTTAAAAAGTATTAAGCTGAATTCTGTCCCATTTGGATCCTCCCTTCTGTATCTTTTATTTCATTTGATCAAAAGGTAATCTAATATTTAATCTCAGGGATTGCATTAAGATGTCAATGCAGACGATGTTTACCAGGACCTTTAACTAAATGTATTTATTGATTTGTAATTTCAAAAGTTTGGATAGGACCCACATTTTCAGAGGTGAGGTTATAAGCCCTGGCAAAGCAAGGATAGTTGCTGGGTTACCAACAATTTGTACTATTTAGATTGTAGCATGACATGCTCTGAGTATGCAGTCAGATTTGCCTCATGGCCATCTTCACATTCTTTTTAACGAAAGAGGAAAAGCCAGGCATAATGGCATTTCAAAGGAATGCTCAAGTATTAATTTATGGGAGCAATTACAGCAATAGGTGTTCATGTCGATTTCTAGACAATTTAATAGCCATTTCATATTACACTTTGTTTATGAAAGTTTGCAGCTGGAAATACCAAATTATGTAGATAGATATCTAGAATATTAGTAGTTAGCCATTTTTGTACTGACTACAGTACAGAGGAGAATGACTATGTAAGTATTGATTTGTATTTAGATGATGCAATAAACAAAGAAGATAACTCAGTGACTTTTGGT

Fln Alignment:

Contig12421___MISCYYSGVRKINRxDVVFRSSRSAPQFCSAVARVANPNSEILILxLRRGEGVIEVVFSFM
D5ABY1_______________MISCYYSGVGKINRxDLVFRSSSNDPQFCGAAVWVGKPNGEILILxLRRAEGVTEVVFSFI

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
135	66		33		0.997452
215		33		66	0.997452
401	16		83		0.994512
402	16	83			0.994512
407		16	83		0.994512
506	14			85	0.993533
507		25		75	0.996473
846		14		85	0.993533
847	14	85			0.993533
848		85		14	0.993533
900	83		16		0.994512
902	83		16		0.994512
903	83			16	0.994512
904		16	83		0.994512
908	16			83	0.994512
912			87	12	0.992554
913			87	12	0.992554
917			87	12	0.992554
1037	11		88		0.923564
1038	11			88	0.923564
2202		66	33		0.997452
2244			25	75	0.996473
2246	75			25	0.996473
2267	75			25	0.996473
2301	75		25		0.996473
2372		80		20	0.995493
2373		80	20		0.995493
2374	80		20		0.995493
2375			20	80	0.995493
2567		20		80	0.995493
2604		87	12		0.992554
2605	87		12		0.992554
2606			12	87	0.992554
2648	88		11		0.923564
2692	85		14		0.993533
2703		14	85		0.993533
2706			85	14	0.993533
2726	83		16		0.994512
2756		16		83	0.994512
2816		77		22	0.999999
2823	10		90		0.90298
2824	10	90			0.90298
2826		90	10		0.90298
2896	12		87		0.992554
2898			87	12	0.992554
3181		88		11	0.999937
3382		22	77		0.999999
3393	14			85	0.993533
3449		16	83		0.994512
3450	16			83	0.994512
3461	83	16			0.994512
3462	83			16	0.994512
3463			83	16	0.994512
3465	83		16		0.994512
3466	16	16	66		0.988813
3469		83		16	0.994512
3471	16	83			0.994512
3567		25		75	0.996473
3568		75		25	0.996473
3608		10		90	0.90298
3709		16		83	0.994512
3741		83	16		0.994512
3846	14			78	0.999974
3873	76		7		0.999983
3933	90		10		0.90298
4050			87	12	0.992554
4066	11			88	0.923564
4068			11	88	0.923564
4069		88	11		0.923564
4070	88		11		0.923564
4101		25		75	1.0
4160	83		16		0.994512
4325	66			33	0.997452
4326	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain