SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12414

Length: 1583 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12414 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GAST1 protein, putative n=1 Tax=Ricinus communis RepID=B9R733_RICCO	-	-	3.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Similar to gibberellin-regulated proteins	-	-	5.835e-09	-

Source	Gene names
Sma3	At2g14900; At2g39540; At5g59845; At5g59845/MMN10.7; GASR1; GIR1; GSVIVT00007725001; GSVIVT00019618001; LOC_Os03g55290; MtrDRAFT_AC158501g15v2; OSJNBb0048A17.7; Os03g0760800; OsI_13625; OsJ_12674; POPTRDRAFT_549969; POPTRDRAFT_592034; POPTRDRAFT_649651; PO

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	0.0	-
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G14900.1	Gibberellin-regulated family protein chr2:6404210-6405043 FORWARD LENGTH=108	4.0e-26	60%
RefSeq	Arabidopsis thaliana	NP_179096.1	gibberellin-regulated protein [Arabidopsis thaliana]	5.0e-26	60%
RefSeq	Populus trichocarpa	XP_002327192.1	predicted protein [Populus trichocarpa]	1.0e-29	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP73

Fln msg: Separated hits, possible frame ERROR between 211 and 858, your sequence is longer than subject: 340 - 111

Fln protein: MDMKKAIHACILLVMVFGLLNLVVCSVEDESTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVCSVEDEINGFSLGQPQTLNKDRHLLAINCGNACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP*

Protein Length: 341

Fln nts: ACATGGGGACTCCAGAGCTCCCGACTTCAGTTTCAGCCTTGTTATATCTGAGATTTGTGGAAGTAGCCAGCCAATAAGAAAAATATTTTATCCTTCTAAGATCTGAGAC_-_ATGGATATGAAGAAAGCAATACACGCGTGCATTCTTCTGGTTATGGTGTTCGGATTGTTGAATCTGGTAGTTTGCAGTGTGGAGGATGAGTCTACAGTCTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGTAGTTTGCAGTGTGGAGGATGAGATCAACGGATTTTCACTCGGTCAGCCTCAGACATTAAATAAGGACCGTCATCTGCTTGCAATAAACTGCGGCAATGCTTGCGGGAAGCGATGTGCATTGGCATCGGTAAAGGACAGGTGCTTGAAGTACTGCGGGATCTGCTGCAGCTCGTGCCAGTGTGTTCCCCCAGGGACATATGGCAACAAGAACGCGTGTCCTTGCTATCGGGATATGAAGAATGCCAAGGGCAAACCCAAATGCCCTTGA___ATGAGCCGCATCGTACAGTTCAGATTGCTGAATATGAGCTAAATAAGTCGATCTGACAATACTATCGAAATGTTCTGAGTGGACTATACAGTAAACGTTTTTAGTGTATTAAAGGTTGCGATTTGTATTTTAATCGTGCTAGTTATCATGTATATGGTCTGATTTCTGGCGTCATGTTATAGACTGAGTGTCTTCATCATATTATTTAATCAAATACTAGACTTTGGAAGTTCTGCCTCTGATTCTAACTCTGTTGTGAAATTGCTTAGAGTTCATGCAAGCATAAAACAATATCCAGGCCTGTAATGCGCTCTAAAAAGCCTGAAACGACGCCAATTTTAACTGAATTTCACTGCATTCACTGCATTTATATTTCGTCTGAGTACCTGAGTATCTAAGCCCTGAAGGCTGAGATAAGGGACCTGGTCGCTGGGCACATTAATTTGGATCGCCGCT

Fln Alignment:

Contig12414___MDMKKAIHACILLVMVFGLLNLVVCSVEDESTVFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVCSVEDEINGFSLGQPQTLNKDRHLLAINCGNACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP
A9NP73_______________MEIKKAVHACILLVMLFGLLNLVVCSVEDEINGFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVCSVEDEINGFSLGQPQTLHKDRHLLALNCGSACGKRCALASVKDRCLKYCGICCSSCQCVPPGTYGNKNACPCYRDMKNAKGKPKCP

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1111	90	10			0.90298
1112		10		90	0.90298
1115	88			11	0.923564
1428	16		83		0.994512
1487	14			85	0.993533
1578		33	66		1.0
1580			53	15	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain