SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12307

Length: 1420 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12307

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CCT domain containing protein	-	-	5.0e-21	66%
FL-Next	tr=Constans-like 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	73%
Sma3	Constans-like protein	-	-	1.21e-17	-

Source	Gene names
Sma3	1col1-GD; 1col1-O2; 1col1-O3; 1col1-O9; At1g73870; At2g24790; At3g02380; At5g15840; At5g15850; CO; CO1; CO2; CO3; CO4; CO5; CO6; CO8; COL1; COL2; COL2a; COL2b; COL2c; COL3; COL7; COLa; COLb; COb; CoL; Col2; F11A12.106; F11A12.7; F14F8_220; F14F8_230; F16B

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	far-red light signaling pathway	GO:0010018	Biological Process	-
Sma3	regulation of photomorphogenesis	GO:0010099	Biological Process	-
Sma3	red light signaling pathway	GO:0010161	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, B-box	IPR000315	-	-
Sma3	Pentaxin	IPR001759	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	CCT domain	IPR010402	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G25440.1	B-box type zinc finger protein with CCT domain chr1:8933939-8935284 REVERSE LENGTH=417	1.0e-26	50%
RefSeq	Arabidopsis thaliana	NP_173915.2	zinc finger protein CONSTANS-LIKE 16 [Arabidopsis thaliana]	2.0e-26	50%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1EL58

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 18 aas, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 351 - 410

Fln protein: MVEELCGSRPRDVMECPVFEQYKGGDELKGDCGGADLGSCDLDQFLNSETDLSGFGVDMDMDVESIIGHGLDEGLGVLGFSTGNWDEKRILQCRELKINEGQDPEQQKDGDNGPIGLLNNRTIKAEDDKDRSDDLCSRPKDEGDHHVALKAKQEPDEPDQSWDTIELDLDQYHEDEEEELEDGTGFGDQYCMAQGASDDQGHDYQDIKIEFDPGSILIAGQAMYSETKLVSLRLNYEDVLTAWSDRGSPWASIHDCNSDGGGCQDAGLVPELGLSYNGAQLNIIEGGGRQEDSCRNAGGGREARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTPGMFCD*

Protein Length: 352

Fln nts: GCCCCATCCCCATGGCGCCGGGCCGAAGTCGTTTAAATCGAAGGTGGGGAGCGTCAAGGACGAGCTAGTGGCCGATCCCGCGGCGGTCCCCGTGCCGGCGGATTCCTCCGCCGGCGATATCAATCTGAATCTCCGCGCGGACGATGATGATTATGACGAGGACGACGATGACTTGCTGCCGCAGGTGCCGACATTTGTGCCCATGGTCGAAGAGCTTTGTGGGTCTCGACCGCGCGACGTCATGGAGTGCCCGGTGTTTGAGCAGTATAAAGGTGGTGACGAGCTGAAGGGCGATTGCGGCGGAGCCGACCTGGGGAGCTGCGATTTAGATCAGTTCTTGAATTCTGAGACGGATCTGTCAGGCTTTGGTGTCGACATGGACATGGACGTGGAAAGCATAATTGGGCACGGGTTGGACGAGGGTCTTGGCGTGCTGGGATTTTCCACTGGTAATTGGGACGAGAAGCGGATTCTACAGTGCAGAGAACTGAAGATAAATGAGGGGCAGGATCCCGAGCAGCAGAAGGACGGCGACAATGGCCCAATTGGGTTGTTGAACAACAGGACTATCAAGGCTGAAGACGACAAGGATCGATCCGACGACCTTTGCTCAAGACCTAAAGACGAGGGCGATCATCATGTGGCCCTGAAGGCTAAACAAGAACCAGATGAACCGGATCAGTCGTGGGACACCATCGAGTTAGACCTGGATCAGTACCATGAAGACGAGGAGGAGGAATTAGAAGATGGCACGGGTTTCGGGGATCAGTACTGCATGGCACAAGGTGCATCGGATGATCAGGGGCATGACTATCAGGACATCAAGATAGAGTTTGACCCGGGTTCGATTCTGATCGCGGGGCAGGCGATGTACAGCGAGACGAAGTTGGTGTCGCTGAGGCTGAATTACGAGGACGTGCTCACGGCGTGGTCAGACCGAGGCTCACCCTGGGCTTCTATCCACGACTGTAACTCGGACGGAGGGGGATGTCAAGACGCTGGGCTTGTTCCAGAGCTGGGCCTGAGCTATAATGGTGCCCAACTTAACATAATCGAAGGAGGAGGAAGGCAAGAAGATTCTTGCAGGAACGCTGGAGGAGGAAGAGAGGCTCGAGTGTTGAGGTATCGAGAGAAGCGTCGCACCAGACTTTTCTCCAAGAAAATCAGATACGAAGTTCGTAAGCTCAACGCCGAGAAGCGACCGCGAATGAAGGGTCGATTCGTGAAGAGAACGCCAGGGATGTTTTGTGACTGA___TGACGACGATAAAGAATAATAGCAGCAGCAACTAGCACAAGTTAGTACTGCGTTTTCGGCTTCTGCAAGCTGGAAGGAGGGAGACACATTATGTAATATATGGAACAGGAGCAACAATTATGTATTATACAATTAACCAGCAATTTTAATTAAATTCAGAATAGT

Fln Alignment:

Contig12307___GREARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT
Q1EL58_______________GREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
792	87		12		0.992554
834		16	83		0.994512
835	16			83	0.994512
854		25		75	0.996473
973	90	10			0.90298
1014	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain