SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12258

Length: 2589 nt

UniGene Fasta

>sp_v3.0_unigene12258
GGCGTTAGAAATTATGTATTTATTTAATCCCAAAACATTTTATGTACATGGGGATTTTCAGAGCAGTTTCTGATGACTGGAGTGAAGAAGGAAGAAGTTGACACAGCTATGTTTGCCCTTGTCCTCTAGCTTGTGGTCAGGTGGTGCTTGCATTTAGGGGCTTATTGTCAGGGAAAGGAGCTACAGTGGTGCACTTTCAGAGCTTGGTACCCTCACATCCTGCTGGTGAGTGCACGCTCTGAAGTGAGTTCTGCTTTCGTTTTTCTCTCCATTCAAGAACTTCCAGCTTACCCGTTTTCATGTGAGAGTAGTGGGTAGCCCTAGACAGTGTAGAAAAATCAGTTCTTGTAATACCGTTTTTTGACGCTGCGCAGTATGAGGGTCCCTGGGTCTGGTTTCAGTTGAGGGTAAGGGCATTTTGTGTTTTCTGGTTTTGCAGTCCACCCCCAAGTGAACCTGGGCTCTGTTTTTTTCTTTCCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGCATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGGTCAGGGAAAAAGCAGCAGTTGGCTGCATTAGGATCAGCGGGAGTGGGATTCACTCCACATGTGATCACGATAGCATCAGGGGAGGATGTAGCGTCAAAAATAATGTCATTTTCACAGCAAGGACCTAGAGCAGTATGCATCCTCTCGGCAAATGGTGCAATATCTAATGTGACCCTTCGCCAGGCTGCCACGTCTGGTGGCACTGTGACATATGAGGGCCGCTTTGAAATACTTTCCTTGTCAGGTTCATTTTTGCTTACAGAAAATGGTGGAACCCGCAGTAGAACTGGTGGTCTTAGTGTTTCACTGGCAAGCCCTGATGGTCGTGTTCTAGGTGGAGGAGTGGCTGGATTGTTAATGGCAGCCAGTCCTGTACAGGTTGTTGTAGGGAGCTTCATTGCAAATGGTCGAAAGCCTCGGCCAGCCAATCCTGATTCTTCTGCTGGACCAGCACAAGCAACTGCTTCTGGAGGAGCTGCGACTGCTAGTCCTGTTTCTCGGGGAACTATGAGCGAGTCCTCTGGAGGTCCAGGTAGTCCAATGAATCAAAGCATTGGAGATTTTAATAGTACACCTTCACAGCCAGTCCAGAACATGGCCTCCTACCAGTCAGTGGGTTGGCAAGGCTCTCAGTCTATGGGAGAGCCTAGACGTAACACGGATATTAACATGTCTTTGCCCGGTGGATAATTATAGAAGCCTTAGGATCTTTCCCTGTGGCTGAATATTGACCACATTTATCAGTTAATCGGCACTGACTACCAACAGGTTTTAAGATGGGCTGCAATTGTTTTCAAACTAACAGATGGAAATTTATAGGTTTCTCAGAACAGATGCAACTTCTCCGCTAGTTGTCACCTGTTTTATTTTAAGAACTAAGACCCGACGTTATATTTCATGCTTGGCAGCATAGACAAAGAACTCTTCGTTTTTGTTCTTCGAAGGATGATGGTACTGCTATTCAGAGGATCATGCAAATCTTTACTGGTCTGCGGACCATGCATAGCCTTTGATTTGGGATACTCAATTGTATTGTTATTGTGAATCGCCTGACTTGTACTTTGACTGATTGTCTATCGCTAATATTTCATATACCCAATTACTGACTTGTTTTGATGGGAATGTTTTCTGTATTTATAAAGCTGACCAACTTAACCATAAATTTTTTGAAG

Ace file of the UniGene sp_v3.0_unigene12258

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb\|EAZ07603.1\| hypothetical protein OsI_29854 [Oryza sativa Indica Group]	-	-	5.60519e-45	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	DNA binding protein, putative	-	-	6.961e-21	-

Source	Gene names
Sma3	46C02.5; AHL1; AHL10; AHL11; AHL12; AHL13; AHL14; AHL2; AHL3; AHL4; AHL5; AHL6; AHL7; AHL8; AHL9; AHP1; AHP2; AT1; AT4g00200; AT4g12080; AT4g17950; AT4g22770; AT4g25320; At1g63470; At1g63470/F2K11_14; At1g63480; At2g33620; At2g45850; At2g45850/F4I18.17; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G33620.1	AT hook motif DNA-binding family protein chr2:14234749-14236563 FORWARD LENGTH=351	78%
RefSeq	Arabidopsis thaliana	NP_973590.1	AT hook motif DNA-binding family protein [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002300624.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK79

Fln msg: your sequence is shorter than subject: 361 - 383

Fln protein: MEGRETMGLPPSSGMTAGLDSFTPVSQRGHAGGALHTGMAPVMRPHPTSGVTIASNPNNSSSSPFHTDSSTAIVSHGMSMSMQKLEPMKRKRGRPRKYGPDGNMALALAPLSSTPGPFSPSQKRGRGRPPGSGKKQQLAALGSAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDGRVLGGGVAGLLMAASPVQVVVGSFIANGRKPRPANPDSSAGPAQATASGGAATASPVSRGTMSESSGGPGSPMNQSIGDFNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG*

Protein Length: 362

Fln nts: GGCGTTAGAAATTATGTATTTATTTAATCCCAAAACATTTTATGTACATGGGGATTTTCAGAGCAGTTTCTGATGACTGGAGTGAAGAAGGAAGAAGTTGACACAGCTATGTTTGCCCTTGTCCTCTAGCTTGTGGTCAGGTGGTGCTTGCATTTAGGGGCTTATTGTCAGGGAAAGGAGCTACAGTGGTGCACTTTCAGAGCTTGGTACCCTCACATCCTGCTGGTGAGTGCACGCTCTGAAGTGAGTTCTGCTTTCGTTTTTCTCTCCATTCAAGAACTTCCAGCTTACCCGTTTTCATGTGAGAGTAGTGGGTAGCCCTAGACAGTGTAGAAAAATCAGTTCTTGTAATACCGTTTTTTGACGCTGCGCAGTATGAGGGTCCCTGGGTCTGGTTTCAGTTGAGGGTAAGGGCATTTTGTGTTTTCTGGTTTTGCAGTCCACCCCCAAGTGAACCTGGGCTCTGTTTTTTTCTTTCCATGAAAATCTTTTTACCCTATACCCACTGCGTTTTGACCTTGTGAGCTGCATCTGGACAAAGCCTAGTTAAGCCCCCACCTGTGTGTTTTTGTAGTAGAGCGCAGAAGGGGAGCAACTCGAGTGTGTGTTTGTGGCATCTCCTCTGAGAAGTAGGGCTGTTTTTGGAATGAGCTGCTGTAATGAGCGTTTTCCTGAGGTTGAAGTGGGGTTTATGCGAGTAAGTGATTAGGCATTTGGCAGCGGTCAGGTATTTGGGTTATACTTACTCTCTCGTTGGAATTTTTAATGCTGCTTTTGGTAAGAAACAGCAGTTAGAAAGATAAAGGCTAAATGCCATTTTCTTTTCCATGGTTTTTGGTCATATTGGTGTAAGAGGGTGGAATCTGAAGTGTTGGTTTTGAGTTCTATAGTCGGCGCTTTTTGGAAATCCTCCTTAGGCGCAGGTTTGATCTCGTGATCTATATCAGGCAAGTTGCAAAAGCAAGCACAGGCACGTTGTGTTGGAGCGTTTTAGGAACGGCGGCGGGGGCTTGGATATCTATGC_-_ATGGAAGGGAGAGAAACAATGGGCTTGCCTCCGTCTTCTGGCATGACAGCAGGACTTGATTCATTTACTCCTGTTTCACAGAGAGGTCACGCGGGTGGCGCTCTGCACACGGGGATGGCGCCTGTAATGCGGCCTCATCCGACTTCCGGCGTTACGATTGCGTCGAATCCAAACAATTCTAGCTCTTCTCCATTCCACACAGATTCATCTACAGCCATTGTGTCGCATGGGATGAGTATGAGTATGCAGAAATTGGAACCAATGAAAAGGAAGCGAGGCAGGCCCAGGAAGTATGGGCCTGATGGGAACATGGCACTGGCTTTGGCTCCTCTCTCTTCCACACCAGGTCCATTTTCACCATCACAGAAACGGGGTAGAGGGCGGCCACCTGGGTCAGGGAAAAAGCAGCAGTTGGCTGCATTAGGATCAGCGGGAGTGGGATTCACTCCACATGTGATCACGATAGCATCAGGGGAGGATGTAGCGTCAAAAATAATGTCATTTTCACAGCAAGGACCTAGAGCAGTATGCATCCTCTCGGCAAATGGTGCAATATCTAATGTGACCCTTCGCCAGGCTGCCACGTCTGGTGGCACTGTGACATATGAGGGCCGCTTTGAAATACTTTCCTTGTCAGGTTCATTTTTGCTTACAGAAAATGGTGGAACCCGCAGTAGAACTGGTGGTCTTAGTGTTTCACTGGCAAGCCCTGATGGTCGTGTTCTAGGTGGAGGAGTGGCTGGATTGTTAATGGCAGCCAGTCCTGTACAGGTTGTTGTAGGGAGCTTCATTGCAAATGGTCGAAAGCCTCGGCCAGCCAATCCTGATTCTTCTGCTGGACCAGCACAAGCAACTGCTTCTGGAGGAGCTGCGACTGCTAGTCCTGTTTCTCGGGGAACTATGAGCGAGTCCTCTGGAGGTCCAGGTAGTCCAATGAATCAAAGCATTGGAGATTTTAATAGTACACCTTCACAGCCAGTCCAGAACATGGCCTCCTACCAGTCAGTGGGTTGGCAAGGCTCTCAGTCTATGGGAGAGCCTAGACGTAACACGGATATTAACATGTCTTTGCCCGGTGGATAA___TTATAGAAGCCTTAGGATCTTTCCCTGTGGCTGAATATTGACCACATTTATCAGTTAATCGGCACTGACTACCAACAGGTTTTAAGATGGGCTGCAATTGTTTTCAAACTAACAGATGGAAATTTATAGGTTTCTCAGAACAGATGCAACTTCTCCGCTAGTTGTCACCTGTTTTATTTTAAGAACTAAGACCCGACGTTATATTTCATGCTTGGCAGCATAGACAAAGAACTCTTCGTTTTTGTTCTTCGAAGGATGATGGTACTGCTATTCAGAGGATCATGCAAATCTTTACTGGTCTGCGGACCATGCATAGCCTTTGATTTGGGATACTCAATTGTATTGTTATTGTGAATCGCCTGACTTGTACTTTGACTGATTGTCTATCGCTAATATTTCATATACCCAATTACTGACTTGTTTTGATGGGAATGTTTTCTGTATTTATAAAGCTGACCAACTTAACCATAAATTTTTTGAAG

Fln Alignment:

Contig12258___MEGRETMGLPPSSGMTAGLDSFTPVSQRG-----HAGGALHTGMAPVMRPHPTSGVTIAXXXXXXXXXXXXXXXXTAIVSHGMSM------SMQKLEXXXXXXXXXXXXXXXXNMALALAPLSSTPGPFXXXXXXXXXXXXXXXXXXQLAALG-----SAGVGFTPHVITIASGEDVASKIMSFSQQGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLASPDXXXXXXXXXXXXXXXSPVQVVVGSFIANGRK--PRPANPDXXXXXXXXXXXXXXXXXXXVSRGTMSE-----XXXXXXXXMNQSIGD--FNSTPSQPVQNMASYQSVGWQGSQSMGEPRRNTDINMSLPGG
B8LK79_______________MESRESMGLSGPGSFGAILHRGVSSSPAGMPTPASAPAAIHTPAA--LRPVVSSVIGVASNPNNPSSSSYATESPATLVPHGVNMGVGMAVSVARTEPLKRKRGRPRKYGPDGSMALALAPLSSVQGSLSPTQKRGRGRPPGSGRKQQLAALGEWLAGSAGMGFTPHVITIAAGEDAATKIMSFSQQGPRAVCILSANGAISHVTLRQPATSGGTVTYEGRFEILSLSGSFLLTENGGTRSRTGGLSVSLAGPDGRVIGGGVAGMLMAASPVQVVVGSFISNGRKAQAKPVNPEPSIAQSQAGYSGGPAVAIPISKGAVNDSSGGKTGGAGNPSLNQNTGASVSNTSAQQPIQNMATYQSMGWPGSQSTGDLRRNTDINIPLPGG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
111			75	25	0.996473
112			25	50	0.995533
113			50	50	1.0
114			50	50	1.0
122		25		50	0.995533
183		50		50	1.0
225	14	85			0.993533
533		20		80	0.995493
654	25	75			0.996473
655	25			75	0.996473
685		33	66		0.997452
934		14		85	0.993533
1642		14		85	0.993533
1968	96			3	0.991825
1969	96			3	0.991825
1980	3			96	0.99245
1982			3	96	0.99245
2210		8		75	0.99999
2259		88		11	0.923564
2260			11	88	0.923564
2518	42	57			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain