SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12253

Length: 2479 nt

UniGene Fasta

>sp_v3.0_unigene12253
CGCCGTGACCTTGGCTGTCACTCAATTCTTTCATGGATATCACTCTTTGAAGCAGTGAGTGTGAGAGCGAGATCGAGATCTGGGGTTGGAGTCCCGTGGAAGATGCACAGGGTGGCAGACGGGCGTGTGGAGGAGTCGAGAAGTATTCAATCGGGTAGGAATCTTTCGCTTTCGTTGTTTGCAACTTGAATTGTGATCGTGAACAAATTTTGAGGCTATAATGCCAGGAGGGAAGACAGTTTGAAAATAGCTAGGGTTTGCGAGTGGCATCCATTAATTGACTGTACAAACCCTATATGTTTTCTGTTCCTTGTCCTCTATTGACCGGGAGCTGTCCCTGTTTCCTATTTCTAATGCTCCATGGCTGATTCCTCCATCATTGTTTATATTCTTTAGACTTGTCTCGTTTTGTCGAAAACACGTTCAGATCAGTCGATTTGAAGGTTTAGTTGCCAAAACTTATTATGAGGAGGCGGCACATGGCAGGCACACCAATTACAGTGGAGGTATTAGGGTTTTGAGGGTGTCGAGGGTTGAAGATGGCTTTGAAGTACATAATTCAGGAAATGAAGGATGGGATGGAGAGTATTTCCAGGAGGAGCTTTGAAATTAAGCTTTACAGAGGCCGATCTCAGAGTAGTGTTAGGGATGAGATAGTACAAGGGGAAGCAGAGACAGAGAAGGACGAAGAGCAACAGCATGTTAATTGGTCCAACATGCTTCCCGAGTTACTGACTGAAATGATTCAGAGAGTGGAAGAGAGCGAGGGAGCGTGGCCAGGTCGCAAAAATGTCGTATCCTGCGCCTCTGTTTGTAAAAGTTGGAGGGATATTACCAAGGAGATTGTCAAAGCACCTGATCAGAGTGGGAAGCTGACTTTTCCCTCTTCTCTGAAGCAGCCTGGTGCACGTGACCCTCCGATGCAGTGTTTCATTAAAAGGCGCAAAGAAACATCCACATATTACTTGTATCTCGGGCTTACACCAACGTTTATGGAAAATGGGAAATTTCTATTGGCTGCAAGGAGGTTCAGGCATCCAACTAGTACTGAATACATAATCTCTCTTGACGCTGATGATCTCTCCCAAGGAAGCAATGCTTATGTAGGAAAACTGAGCTCTGATTTCCTGGGCACTAAATTTACTATCTATGATAGTCAACCACCACATAATGGTGCACGACTCTCAAGCAATCGAGCTGGTCGGCGGGTAGCATCAAAACAAGTCTCTCCTCGAGTTCCAGCTGGAAGTTATAATGTTGGACAGGTAGCTTACAAGTTTAATCTTTTGGGCTCAAGGGGTCCTAGACGGATGCAATGCCTACTTCATTCTGTACAATTCTCAACCATGGAACACATAGGAAAAGTTTCGACTTGTAAAGAAGTCTCAGATTCCACAATTGATAAATCAATATCCACATTGAATGGAGAAGGATCTAGCAAATTTTCAGAATCTTCTGACATTCCTGTTGGAAAATGTGCACCTATAATTTTGAAGAACAAGGCTCCAAGATGGCATGAACAACTGCAGTGTTGGTGTTTGAATTTTCATGGGCGTGTAACTGTGGCTTCTGTAAAGAATTTCCAGTTAGTTGCTGCCATAGACCCTAGTCGGCCAGGAGCACAAGTTGATCAAGATGCAGTTCTTCTCCAGTTTGGTAAGGTTGGAAAGGACATGTTTACAATGGACTATAGATATCCTCTGTCAGCCTTCCAGGCATTTGCAATATGCTTGACCAGCTTTGGTACTAAACTTGCTTGTGAATGAGACCATATTTGTGATGTAGCTTCTCAAGAAAGAAAAACATAATTGACAAAAATGATTTGGGGTTGATTATGAAGATGTTTGTCATCTGATGTTTTAATGAAGGGTTTAAGCAAGATTATTCACTAGAAGCTTGCTATAGGGATATTATGACCCACGTTTTTACTGGGAGATCTCAGTTAACAGAGGAAGTGTTGTGTATTTGTCCTAGTATAAACTGTATTATTATCAAATTGTGATCTAGTGGGCCCAGTTGAGGTTAATTTCCTGGAGACCTCATTTGCACCATACAGCAGATTTCCAAGTTCCTAGCAAAGCTGAATTTGCTACTGTTTTGAAAAACTATTTAGCTGATGATTGGGATTGAAGTGGTTTATGCTTTAAGCTTGTACAGATCATCTGGAAGATTGGTTTTTCATTCATTTGGTAGCTGCAGGAGAAGAAAAACCATAGGATAACACTCCTTGGTAGAAAAAGATTGTGTAGCTTCTGGTTTAAACCAGCTACAAACTAACAATTCCCAAATTTTGCATGCTCAAAACTGTGGCCATATCAACTCCCTTATATACCTTATTAACGCAGTCCAGCATGATAATGAGTTGTTGTAGTTGTGTTGGTGATTGAATTGCCAAAGAGGTTTGAAGCATCTATCTTTGACTGAAGATATCTTCCAAATAGTTACAAGTAAGTTAAGTAAACTTAAGTTTAACAAACGA

Ace file of the UniGene sp_v3.0_unigene12253

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tubby, C-terminal	IPR000007	-	0.0	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G53320.1	AtTLP7, TLP7 tubby like protein 7 chr1:19891237-19893429 REVERSE LENGTH=379	61%
RefSeq	Arabidopsis thaliana	NP_564627.1	Tubby-like F-box protein 7 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002316855.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW2

Fln msg:

Fln protein: MALKYIIQEMKDGMESISRRSFEIKLYRGRSQSSVRDEIVQGEAETEKDEEQQHVNWSNMLPELLTEMIQRVEESEGAWPGRKNVVSCASVCKSWRDITKEIVKAPDQSGKLTFPSSLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFMENGKFLLAARRFRHPTSTEYIISLDADDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCLLHSVQFSTMEHIGKVSTCKEVSDSTIDKSISTLNGEGSSKFSESSDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE*

Protein Length: 410

Fln nts: CGCCGTGACCTTGGCTGTCACTCAATTCTTTCATGGATATCACTCTTTGAAGCAGTGAGTGTGAGAGCGAGATCGAGATCTGGGGTTGGAGTCCCGTGGAAGATGCACAGGGTGGCAGACGGGCGTGTGGAGGAGTCGAGAAGTATTCAATCGGGTAGGAATCTTTCGCTTTCGTTGTTTGCAACTTGAATTGTGATCGTGAACAAATTTTGAGGCTATAATGCCAGGAGGGAAGACAGTTTGAAAATAGCTAGGGTTTGCGAGTGGCATCCATTAATTGACTGTACAAACCCTATATGTTTTCTGTTCCTTGTCCTCTATTGACCGGGAGCTGTCCCTGTTTCCTATTTCTAATGCTCCATGGCTGATTCCTCCATCATTGTTTATATTCTTTAGACTTGTCTCGTTTTGTCGAAAACACGTTCAGATCAGTCGATTTGAAGGTTTAGTTGCCAAAACTTATTATGAGGAGGCGGCACATGGCAGGCACACCAATTACAGTGGAGGTATTAGGGTTTTGAGGGTGTCGAGGGTTGAAG_-_ATGGCTTTGAAGTACATAATTCAGGAAATGAAGGATGGGATGGAGAGTATTTCCAGGAGGAGCTTTGAAATTAAGCTTTACAGAGGCCGATCTCAGAGTAGTGTTAGGGATGAGATAGTACAAGGGGAAGCAGAGACAGAGAAGGACGAAGAGCAACAGCATGTTAATTGGTCCAACATGCTTCCCGAGTTACTGACTGAAATGATTCAGAGAGTGGAAGAGAGCGAGGGAGCGTGGCCAGGTCGCAAAAATGTCGTATCCTGCGCCTCTGTTTGTAAAAGTTGGAGGGATATTACCAAGGAGATTGTCAAAGCACCTGATCAGAGTGGGAAGCTGACTTTTCCCTCTTCTCTGAAGCAGCCTGGTGCACGTGACCCTCCGATGCAGTGTTTCATTAAAAGGCGCAAAGAAACATCCACATATTACTTGTATCTCGGGCTTACACCAACGTTTATGGAAAATGGGAAATTTCTATTGGCTGCAAGGAGGTTCAGGCATCCAACTAGTACTGAATACATAATCTCTCTTGACGCTGATGATCTCTCCCAAGGAAGCAATGCTTATGTAGGAAAACTGAGCTCTGATTTCCTGGGCACTAAATTTACTATCTATGATAGTCAACCACCACATAATGGTGCACGACTCTCAAGCAATCGAGCTGGTCGGCGGGTAGCATCAAAACAAGTCTCTCCTCGAGTTCCAGCTGGAAGTTATAATGTTGGACAGGTAGCTTACAAGTTTAATCTTTTGGGCTCAAGGGGTCCTAGACGGATGCAATGCCTACTTCATTCTGTACAATTCTCAACCATGGAACACATAGGAAAAGTTTCGACTTGTAAAGAAGTCTCAGATTCCACAATTGATAAATCAATATCCACATTGAATGGAGAAGGATCTAGCAAATTTTCAGAATCTTCTGACATTCCTGTTGGAAAATGTGCACCTATAATTTTGAAGAACAAGGCTCCAAGATGGCATGAACAACTGCAGTGTTGGTGTTTGAATTTTCATGGGCGTGTAACTGTGGCTTCTGTAAAGAATTTCCAGTTAGTTGCTGCCATAGACCCTAGTCGGCCAGGAGCACAAGTTGATCAAGATGCAGTTCTTCTCCAGTTTGGTAAGGTTGGAAAGGACATGTTTACAATGGACTATAGATATCCTCTGTCAGCCTTCCAGGCATTTGCAATATGCTTGACCAGCTTTGGTACTAAACTTGCTTGTGAATGA___GACCATATTTGTGATGTAGCTTCTCAAGAAAGAAAAACATAATTGACAAAAATGATTTGGGGTTGATTATGAAGATGTTTGTCATCTGATGTTTTAATGAAGGGTTTAAGCAAGATTATTCACTAGAAGCTTGCTATAGGGATATTATGACCCACGTTTTTACTGGGAGATCTCAGTTAACAGAGGAAGTGTTGTGTATTTGTCCTAGTATAAACTGTATTATTATCAAATTGTGATCTAGTGGGCCCAGTTGAGGTTAATTTCCTGGAGACCTCATTTGCACCATACAGCAGATTTCCAAGTTCCTAGCAAAGCTGAATTTGCTACTGTTTTGAAAAACTATTTAGCTGATGATTGGGATTGAAGTGGTTTATGCTTTAAGCTTGTACAGATCATCTGGAAGATTGGTTTTTCATTCATTTGGTAGCTGCAGGAGAAGAAAAACCATAGGATAACACTCCTTGGTAGAAAAAGATTGTGTAGCTTCTGGTTTAAACCAGCTACAAACTAACAATTCCCAAATTTTGCATGCTCAAAACTGTGGCCATATCAACTCCCTTATATACCTTATTAACGCAGTCCAGCATGATAATGAGTTGTTGTAGTTGTGTTGGTGATTGAATTGCCAAAGAGGTTTGAAGCATCTATCTTTGACTGAAGATATCTTCCAAATAGTTACAAGTAAGTTAAGTAAACTTAAGTTTAACAAACGA

Fln Alignment:

Contig12253___MALKYIIQEMKDGMESISRRSFEIKLYRGRSQSSVRDEIVQGEAETEKDEEQQHVNWSNMLPELLTEMIQRVEESEGAWPGRKNVVSCASVCKSWRDITKEIVKAPDQSGKLTFPSSLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFMENGKFLLAARRFRHPTSTEYIISLDADDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCLLHSVQFSTMEHIGKVSTCKEVSDSTIDKSISTLNGEGSSKFSESSDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE
B8LQW2_______________MAFKYIIQEMKDGMESISRRSFEIKLHRGRSQSSVRDEILQRAAATEKDEEEQRVNWSNMLPELLTEMIQRVEASEGAWPGRKNVVSCAAVCKSWRDITKEIVKAPDQSGKLTFPASLKQPGARDPPMQCFIKRRKETSTYYLYLGLTPTFLENGKFLLAARRFRHPTSTEYIISLDAEDLSQGSNAYVGKLSSDFLGTKFTIYDSQPPHNGARLSSNRAGRRVASKQVSPRVPAGSYNVGQVAYKFNLLGSRGPRRMQCTLHSVPFSTMEQRGKVSTSKEISDSTIDKSTSTLNGEGSSKVSESCDIPVGKCAPIILKNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAAIDPSRPGAQVDQDAVLLQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFGTKLACE

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
648	25		75		0.996473
749	85		14		0.993533
901	10	90			0.90298
902	10	90			0.90298
906		10		90	0.90298
907			90	10	0.90298
910	10	90			0.90298
914	90	10			0.90298
916		90	10		0.90298
917	10	90			0.90298
920	10	90			0.90298
921	10		90		0.90298
928			10	90	0.90298
929	10		90		0.90298
930			10	90	0.90298
933		90	10		0.90298
938	90		10		0.90298
940	90	10			0.90298
943		80	20		0.999996
945		88		11	0.923564
946	88			11	0.923564
947	90			10	0.90298
948	90			10	0.90298
987	88		11		0.923564
1248	87		12		0.992554
1856	87			12	0.992554
1870	12		87		0.992554
1877		16	75		0.99999
1879	75			16	0.99999
1880	75			25	1.0
1882	83		16		0.999991
1883		16		75	0.99999
1886			16	83	0.999991
2015		88	11		0.923564
2016	88			11	0.923564
2017		11	88		0.923564
2018			11	88	0.923564
2022		11	88		0.923564
2023		11	88		0.923564
2026	88		11		0.923564
2027	88		11		0.923564
2028		11		88	0.923564
2034		11	88		0.923564
2035	11		88		0.923564
2054	87			12	0.992554
2136	11		88		0.923564
2137		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain