SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12250

Length: 1342 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12250 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative peptide transporter protein [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Oligopeptide transporter, putative	-	-	1.683e-17	-

Source	Gene names
Sma3	At2g40460; At5g01180; At5g46040; At5g46050; F7J8_160; GSVIVT00009628001; GSVIVT00020319001; GSVIVT00021470001; GSVIVT00024159001; GSVIVT00028535001; GSVIVT00028536001; GSVIVT00029402001; LOC_Os03g04570; LOC_Os10g33170; LOC_Os10g33210; MCL19.10; MCL19.9; N

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46050.1	ATPTR3, PTR3 peptide transporter 3 chr5:18675062-18679071 REVERSE LENGTH=582	47%
RefSeq	Arabidopsis thaliana	NP_199417.1	peptide transporter PTR3-A [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002314492.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR41

Fln msg: Overlapping hits, possible frame ERROR between 734 and 731, your sequence is shorter than subject: 368 - 449

Fln protein: RHKVRAGSPLQRMGRVIVRVLQNWKLQTPSDPSQLFEVDSSEYAAKGRYPIAHTQTRPLRCLDKAAIKTAEDPSSSKVCTVTEVEETKLMIRLLPVWLANIIPSTMVTLVGTLFVKQAATLDRHLGNSRSFEIPAASTSAILTLSMLITTVVYDRILVPVFRRFTGNPKGITSLQRMGAGMVIQILVMVIAIGTEIKRLDVIRDHGLQNNSKAIVPRSIYTLIPQFALMGTADALLDIGKIExxxDQAPESMQSLGTSLYTSSLGVGSFMGSFLLTIVSNITGRRGHKGWILNNLNASRLDYYYAFLAVLNFLNFIFFFVVSYRYRYKREPTEAFGKDTEKAIQIVAHRKQDDEEVIGISTALNYYK*

Protein Length: 369

Fln nts: ACAGGCATAAGGTCCGAGCTGGAAGCCCTCTTCAGCGAATGGGAAGGGTAATTGTCAGAGTACTTCAGAACTGGAAGCTCCAAACTCCTTCAGATCCCTCTCAGCTTTTCGAAGTGGACTCCTCAGAATATGCTGCTAAAGGAAGATACCCTATTGCTCATACTCAGACTCGGCCACTAAGGTGCTTAGACAAGGCAGCCATTAAAACTGCAGAAGACCCATCCAGCTCCAAGGTCTGCACTGTGACTGAAGTAGAAGAAACGAAGCTCATGATACGGCTTCTACCCGTCTGGTTGGCTAACATCATACCCAGCACGATGGTAACGCTGGTAGGCACACTGTTTGTGAAACAGGCCGCGACACTAGACAGGCATCTGGGTAATTCCAGGAGCTTCGAAATCCCAGCAGCGAGCACTTCGGCTATCCTCACGCTATCAATGCTAATAACAACGGTGGTCTATGACAGAATATTGGTCCCCGTTTTCCGAAGATTCACAGGAAATCCCAAGGGCATAACATCTCTGCAGAGAATGGGAGCAGGCATGGTGATCCAGATTCTTGTGATGGTCATAGCAATTGGCACAGAAATTAAACGATTGGATGTGATTAGAGATCACGGGCTTCAAAATAACAGCAAGGCAATTGTGCCCCGCAGCATATACACGTTGATTCCACAATTTGCACTAATGGGCACAGCAGACGCGTTGCTAGATATCGGGAAAATAGAAxxxxxxxxxGACCAAGCACCAGAAAGTATGCAGAGCCTCGGAACTTCACTGTACACGAGTTCTCTGGGAGTGGGTTCTTTCATGGGTAGTTTTCTGCTGACGATTGTGAGTAATATCACGGGACGAAGGGGCCACAAGGGGTGGATTCTTAATAATCTGAATGCATCACGTCTGGATTATTATTATGCATTCTTAGCTGTTCTTAATTTCTTGAACTTCATTTTCTTCTTCGTCGTCTCTTATCGCTACCGATATAAGAGGGAACCCACTGAGGCTTTCGGGAAAGATACAGAGAAGGCAATACAGATTGTAGCTCACAGGAAACAGGATGATGAGGAAGTAATTGGGATTAGCACTGCACTGAATTATTATAA___ATAAATAATCGGGATTAGCGCTGCACTGGACTGGGTACTTAGGAATAGATGTTTAATTATTATAAATAAAATGAGATGACATTCACGACCATTTTGCTTAGTCGTCTCTGTCCTACTCATAAAGCCTTGTACTTTGCTTGAAGAAAATCGGCAGCAAAAAAACAAACAGGACATGCATGATGGAGTTCAATAATCCACTTTCCTCTTTGCAAGTATAAAGTTGCAGGTGTATTTTCAACGC

Fln Alignment:

Contig12250___RHKVRAGSPLQRMGRVIVRVLQNWKLQTPSDPSQLFEVDSSEYAAKGRYPIAHTQTRPLRCLDKAAIKTAE-DPSSSKVCTVTEVEETKLMIRLLPVWLANIIPSTMVTLVGTLFVKQAATLDRHLGNSRSFEIPAASTSAILTLSMLITTVVYDRILVPVFRRFTGNPKGITSLQRMGAGMVIQILVMVIAIGTEIKRLDVIRDHGLQNNSKAIVPRSIYTLIPQFALMGTADALLDIGKIEFxYDQAPESMQXXXXXXXXXXXXXXSFMGSFLLTIVSNITGRRGHKGWILNNLNASRLDYYYXXXXXXXXXXXXXXXXVSYRYRYKREPTEAFGKDT
B8LR41_______________RHKVRKGNPFGRMAQVIVAAARKWRVNMPSDPAKLHEVDPKQYVAQGRFPIHHTPS--IRFLDKAATNDGSTSPWEWKLCSVTQVEETKLMIKMLPIWVAMFMPSAVIAQVNTLFIRQGTTLNRHMGSH--FEIPAGSVTSFVTMSFLIFLVVYDRILVKTFRKFTGNRRGITILQRIGIGLAIHTLVMVVATITEIKRIRVVKAHGLEGNPKAVAPLTIFILLPQYFLMGIAEAFLEVGKLEFxYDQAPESMQSIGTALVGTTIGIGNFISSFLLTVTTKITGRKGHTNWVLNNLNASRLYYYYALLAVLNVLNFVFFLVVSRFYVYKRETNEAFGNDS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
125		33		66	0.997452
286	90		10		0.90298
302	10			90	0.90298
328			10	90	0.90298
337		60		40	1.0
808		66		33	0.997452
825	66		33		0.997452
951		16		83	0.994512
953		16	83		0.994512
955	83			16	0.994512
962	20		80		0.995493
1132		75		25	0.996473
1238		33	66		0.997452
1240	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain