SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12239

Length: 1305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene12239 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NPB5_PICSI	-	-	0.0	48%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	GrpE protein homolog	-	-	9.756e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-phosphate 3-epimerase.	EC:5.1.3.1	-	1.259e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	1.259e-06	%
Sma3	Pentose and glucuronate interconversions	00040	1.259e-06	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.259e-06	%
Sma3	Metabolic pathways	01100	1.259e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	1.259e-06	%

Source	Gene names
Sma3	At1g36390; At5g17710; CGE1; CGE1a\|CGE1b; CHLREDRAFT_196855; F7F23.11; GSVIVT00015306001; GSVIVT00033682001; OJ1004_A05.20; OSIGBa0160I14.6; OSJNBa0084A10.6; Os02g0612000; Os04g0431100; OsI_08039; OsI_15938; OsJ_07499; OsJ_14850; PHYPADRAFT_148179; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G17710.2	-	58%
RefSeq	Arabidopsis thaliana	NP_568356.1	molecular chaperone GrpE [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002319738.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPB5

Fln msg:

Fln protein: MTAALASAALLLANTGVADIYVSRKFGISFKPRNSLKKTTEPFFHRVGCSFVTPADALPQRRQLPFAASDEVAETEPSELSEVENNDEEIEENDADTSDDADVEQEPPSLMQMLKQSYKQAIAVNDESKIAEVETQLQSMEDERNTLSQQALCLREELATEKERFLRLNADFDNFRKRSEKERLSLASNVQAEVIERLLPILDSFELAKTQIKIETEGEEKLNNSYQSIYKQISEVMRALGVSVVETIGKLFDPMLHEAVMREESTEFEEGIIIEEFRRGFILGDRLLRPAMVKVSAGPGPVKPAEPSTEMVDPSEVTAEAPEETAETPEETTRITDDPLPSADASPAES*

Protein Length: 352

Fln nts: ATGGGACGGATGATTTTTCTACTCTATGAGGTAGAGGGGTTCAAATTCTCTCCGGCTACACGTTCGTAATATATTTCAACAACTACGCC_-_ATGACAGCTGCACTAGCAAGTGCAGCGCTTTTGTTAGCCAACACTGGTGTAGCAGATATCTATGTATCGCGGAAATTCGGAATTTCATTTAAACCACGGAATTCCTTGAAGAAAACGACCGAACCTTTCTTTCACAGGGTTGGATGCTCCTTCGTTACTCCCGCCGATGCACTCCCACAGCGACGCCAGTTGCCGTTCGCGGCGTCTGACGAAGTTGCAGAAACTGAACCTTCTGAGCTGTCAGAGGTGGAAAATAATGATGAGGAGATTGAGGAAAATGATGCTGATACCTCTGATGATGCAGATGTTGAACAAGAACCTCCATCACTTATGCAAATGTTGAAACAGTCCTACAAGCAAGCCATTGCAGTTAATGATGAAAGTAAAATTGCAGAGGTAGAGACTCAGCTTCAGTCTATGGAAGATGAGAGGAATACTTTGTCACAACAAGCATTGTGTTTAAGAGAAGAGTTGGCAACTGAAAAGGAACGGTTCCTTCGTCTCAATGCAGACTTCGACAATTTCAGGAAAAGGTCAGAGAAAGAACGGCTATCTCTTGCATCTAATGTTCAGGCGGAAGTTATTGAGAGGCTCTTGCCCATTCTGGATAGTTTCGAACTAGCGAAAACACAGATCAAGATAGAAACAGAAGGAGAGGAAAAACTAAACAATAGCTACCAGAGTATATATAAACAGATTAGTGAAGTCATGAGAGCATTGGGTGTCTCTGTTGTAGAGACAATTGGCAAGCTATTTGATCCCATGCTCCATGAAGCAGTTATGCGTGAGGAATCGACAGAATTTGAAGAAGGAATTATAATTGAAGAATTCAGGCGAGGCTTCATCCTTGGAGATAGGCTTTTGCGCCCCGCTATGGTGAAAGTTTCAGCTGGTCCAGGCCCTGTAAAGCCTGCTGAGCCTTCTACAGAAATGGTTGATCCATCAGAAGTGACAGCTGAAGCACCAGAAGAGACAGCTGAAACACCAGAAGAAACCACTCGAATCACTGATGATCCACTGCCATCGGCAGATGCCTCTCCGGCTGAATCTTAA___TCGAATTCATAGAATGGCTCTATTTCTCATAGTAAATTTCTGTAAATACGAGTTGAAACATGAGTTTCCAATATAGAATGGCCTGTTCTTATCTTCTCTCCACATTAAAAGTCATGAAATGGATGCGTCTGTAATATATATATATATATATATTAGAGTTTAT

Fln Alignment:

Contig12239___KTTEPFFHRVGCSFVTPADALPQRRQLPFAASDEVAETEPSXXXXXXXXXXXXXXXXXDTSDDADVEQEPPSLMQMLKQSYKQAIAVNDESKIAEVETQLQSMEDERNTLSQQALCLREELATEKERFLRLNADFDNFRKRSEKERLSLASNVQAEVIERLLPILDSFELAKTQIKIETEGEEKLNNSYQSIYKQISEVMRALGVSVVETIGKLFDPMLHEAVMXXXXXXXXXXXXXXXXXXXXILGDRLLRPAMVKVSAGPGPVKPAEPSTEMVDPS
A9NPB5_______________KSSGRFTNRATVGFVPLKPV--NRRRSTFVVYQKVAETESKQVEEESDDELEESDTED--SKAATAEQKPASLVPTLLQAYKEAIANSDDTRVSDIEVQLQAIEDEKNALSKLVAALTEEASRGKDKLLRLNADFDNFRKRAEKERLSLASNIQGDVIESLLPMVDDFERAKTQIKIQTEGEEKIDKSYQGIYKQFVEIMKGLHVNVVDTVGKPFDPMLHEAILHEDSTSFEEGIIIEEFRRGFILGDKLLRPAMVKVSAGPGPAKDAEDSANDAEHS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1208	88	11			0.923564
1209		11	88		0.923564
1211		11		88	0.923564
1212	22		77		0.999999
1236	85	14			0.993533
1237		14		85	0.993533
1238		14		85	0.993533
1240		85		14	0.993533
1272		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
11	30	AT AT AT AT AT AT AT AT AT AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain