SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12205

Length: 1243 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12205

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML	-	-	0.0	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	GTP-binding protein	-	-	4.502e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	1.047e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Sphingolipid metabolism	00600		1.047e-28	%
Sma3	Metabolic pathways	01100		1.047e-28	%

Source	Gene names
Sma3	24.t00014; 25.t00015; 26.t00023; 80A08_30; ARA; ARA-1; ARA-2; ARA-4; AT2G43130; AT4g18430; AT4g18800; AT4g39990; At1g05810; At1g06400; At1g09630; At1g16920; At1g18200; At1g28550; At1g73640; At2g31680; At2g33870; At2g43130; At3g07410; At3g12160; At3g15060;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	Golgi-associated vesicle	GO:0005798	Cellular Component	-
Sma3	trans-Golgi network	GO:0005802	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	inter-Golgi cisterna vesicle-mediated transport	GO:0048219	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GCK	IPR012891	-	-
Sma3		IPR013753	-	-
Sma3		IPR015595	-	-
Sma3	DNA-directed DNA polymerase, family A, conserved site	IPR019760	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60860.1	AtRABA1f, RABA1f RAB GTPase homolog A1F chr5:24484750-24485565 FORWARD LENGTH=217	80%
RefSeq	Arabidopsis thaliana	NP_200894.1	RAB GTPase homolog A1F [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002300408.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV29

Fln msg:

Fln protein: MAYKADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIIVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHTTFESVERWLKELQDHTDNNIVVMLVGNKADLRHLRAVSTEDSQALAERESLYFMETSALESTNVENAFTQVLTQIYRIVVKKALDVSEEPSAIPPQGQAINIKDDVTATKKPMCCNF*

Protein Length: 217

Fln nts: GCCTACACACTAGTTTTATGAAACCCGATACTTTTTGGTTCTGGAGAGCTTCATAATGCACTGTATGCTTTACAATACATAGTCAGTCATATCCAGGGATCTCATTATATAGATTCACACTCTTATATCTCCATGCCCCCTTTACCCATATGGTAGGTTGTTGGGATTAAAAACTTAACGGTACCATTTTGGCCTCTCACTATCATACCCAGTGAAACATATATATCAGAGAGGGCACCCAATAGATAGATTGAGAGGATC_-_ATGGCATACAAAGCAGATGATGACTATGACTACCTGTTCAAAGTGGTGTTGATAGGAGATTCAGGTGTAGGCAAGTCAAATCTGCTGTCCCGATTTACCAGGAACGAGTTCAGCTTGGAGTCCAAGTCGACTATTGGTGTGGAATTTGCAACTCGCAGCATCATTGTGGATGGGAAAACGATCAAGGCTCAGATATGGGACACTGCAGGCCAAGAGAGGTACAGAGCCATCACAAGTGCATACTATCGGGGGGCTGTGGGTGCTTTATTGGTGTATGATATAACTCGGCACACTACTTTTGAAAGTGTGGAGAGATGGCTGAAGGAGCTTCAGGACCATACAGATAACAACATTGTTGTAATGCTCGTGGGTAATAAAGCTGACCTACGCCATTTGAGGGCTGTTTCCACTGAAGATAGCCAAGCCTTAGCTGAGAGAGAATCTCTCTATTTCATGGAGACATCGGCTTTGGAATCGACAAATGTTGAGAATGCTTTCACGCAGGTTCTCACTCAAATCTATAGAATTGTTGTCAAGAAGGCTCTTGATGTTAGTGAGGAGCCTTCTGCAATTCCGCCACAAGGACAAGCAATAAATATCAAGGATGATGTTACAGCTACCAAGAAGCCAATGTGCTGTAATTTCTAG___CAGGTAGAGGCAAGTTGTTAGATGATGCAGATATTTGAACAGATTCTTTACAATTGTAGTTGTTTGCACGAATGGTTGAGTAACTTGTTTACTCATTTGAGGGTTTCTCAGTTCTGATGACATATTTCTGGAGTCACATGAATGCTCTATTGGCTGTGTTGACTAAATTAATTTCATCAGGTGTCTAGAATAGATTCGAGGAACAGCAATTTGTAACTTATGATGAGTGATTTCAGCGATATATCTTGTTTTTGTCATAATTCAATACTCGATGTTTTGTACTCTTTGCATAATACGATTATTATTGATCCTTCCTATTACATTGATTTACTAT

Fln Alignment:

Contig12205___MAYKADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIIVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHTTFESVERWLKELQDHTDNNIVVMLVGNKADLRHLRAVSTEDSQALAERESLYFMETSALESTNVENAFTQVLTQIYRIVVKKALDVSEEPSAIPPQGQAINIKDDVTATKKPMCCN
A9NV29_______________MAYKVDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSINVDGKMIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRHVTFENVERWLKELRDHTEHNIVVMLVGNKSDLRHLRAVSTEDAQTFAEREGLYFIETSALESTNVENAFKQVLTQIYRIVSKKALDVSEDNAAAPPQGQTINVKDDVTATKKVGCCS

SNPs (tot: 4)

Position	A %	G %	T %	Probability
819	16	83		0.994512
1080	75		25	0.996473
1083	25		75	0.996473
1206	21	78		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain