SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12170

Length: 1182 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12170

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAM-like protein [Arabidopsis thaliana] gb\|AAN15611.1\| NAM-like protein [Arabidopsis thaliana]	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	NAC domain protein	-	-	1.287e-39	-

Source	Gene names
Sma3	ANAC; ATAF; ATAF1; At1g01720; At1g52880; At1g52890; At1g61110; At1g61110/F11P17_16; At1g69490; At1g77450; At1g77450/T5M16_4; At3g04070; At3g15500; At3g15510; At4g27410; At5g08790; At5g08790/T2K12_140; At5g08980; At5g13180; At5g39610; At5g63790; AtNAC2; B1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G52880.1	NAM, ANAC018, ATNAM, NARS2 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr1:19689285-19690430 REVERSE LENGTH=320	62%
RefSeq	Arabidopsis thaliana	NP_175696.1	NAC domain-containing protein 18 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002316635.1	NAC domain protein, IPR003441 [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABS0

Fln msg:

Fln protein: MEGVAFQQQAVPELLVGFRFHPTDEELITHYLEKKVSSSPLPAPIIADIDPYQHDPWDLPAKAFFGENEWYFFSQKDREYPSGARPNRAAGSGYWKATGSDIPIVSMSGSASPRKVGVKKSLVFYKGKAGEGVMTNWIMHEYCLAQTLPTERKGSVPLDDWVLCRLFQRLNHSPGMLSCSQLEVPSPSATDVQRTRLKPAMPKFSSFSRVLLNEGPSMENLPNHATSDANNAAVSSAESTSSLQVVPHPPLNSSESGSDSSMNWSTHSLQETSARRINIFDIFLIKIRREQRGSNPSL*

Protein Length: 300

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCTCCCTAGTTATGGGGAAACACGTCTCTCCGATCGCTTGCTTGCTGTCTCAGCAAGCAATTAATCGTTGACG_-_ATGGAGGGAGTGGCATTCCAGCAGCAGGCGGTGCCAGAGCTCCTTGTAGGCTTCAGATTTCATCCCACCGATGAGGAACTCATCACCCATTACCTGGAGAAGAAGGTATCCTCCTCCCCTCTGCCTGCCCCAATTATTGCAGACATTGATCCCTACCAACACGACCCCTGGGATTTGCCCGCGAAAGCATTTTTCGGGGAGAACGAATGGTATTTCTTCAGTCAGAAGGACCGGGAATACCCCAGCGGAGCGCGGCCAAACAGAGCCGCCGGCTCTGGCTACTGGAAAGCCACGGGATCAGACATACCCATTGTTAGTATGTCGGGAAGCGCGTCGCCGAGAAAAGTGGGCGTGAAGAAATCGTTGGTGTTTTACAAAGGAAAGGCCGGTGAGGGCGTGATGACCAACTGGATCATGCACGAATACTGCCTCGCCCAAACCCTGCCAACCGAGAGAAAGGGATCTGTGCCCTTGGACGATTGGGTGCTGTGCCGATTGTTTCAGAGACTGAATCATTCTCCCGGGATGCTCTCGTGCTCACAGCTGGAGGTCCCGTCGCCATCAGCTACTGACGTGCAGCGCACCCGACTAAAACCAGCGATGCCAAAATTCAGTTCCTTTTCCAGGGTGCTTCTGAACGAGGGTCCATCTATGGAGAACTTACCGAACCATGCCACGTCAGATGCCAACAACGCAGCCGTGTCCTCTGCGGAGTCCACATCCTCGCTGCAGGTAGTTCCCCACCCGCCGCTAAATTCATCGGAGAGCGGCAGCGACTCGTCAATGAATTGGTCTACGCACAGCCTACAGGAGACATCTGCTCGTCGAATAAATATTTTTGACATTTTTCTGATAAAAATCCGTCGGGAACAGAGGGGAAGCAATCCTAGTCTTTGA___GAACTGTGATTTTAAGGGTTGCAACTAATTGTATGCACTGATGATTTACCCATTTTCAAGGTGGTAACTATAAATGAAAGAAATTGGGTTATAGCTGTCGCTATAAAGCTTTTTTTTCATACTATTTAATTTAGTCTAAAATAGTAGACGTCTAGGCATAATTATGCTTAAATGAAGTAAACATTTG

Fln Alignment:

Contig12170___MEGVAFQQQAVPELLVGFRFHPTDEELITHYLEKKVSSSPLXXXXXXXXXXYQHDPWDLPAKAFFGENEWYFFSQKDREYPSGARPNRAAGSGYWKATGSDIPIVSMSGSASPRKVGVKKSLVFYKGKAGEGVMTNWIMHEYCLAQTLPTERKGSVPLDDWVLCRLFQRLNHSPGMLSCSQLEVPSPSATDVQRTRLKPAMPKFSSFSRVLLNEGPSMENLPNHATSDANNAAVSSAESTSSLQ
D5ABS0_______________MEGLAFHQQVLLQLPVGFRFEPTDEELLIYYLKKKVSSSPFPGSVIAEIDLYKHDPWDLPAKAFFGEKEWYFFSPRDREYPNGAPPNRSAGSGYWKATGTDKPIV----ITSSQKVGVKKSLVFYKGMPLQGLKTNWIMHEYRLAETLPSERKGSMLLDDWVLCRIYEKVSYSPMVVSCQDVEALSP---DLRRTRQKSAMLKFSSFSRLLLRDGPFMESLLSHATSDANNAAVSSTESLSSLQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
688	4			95	0.99692
722		95	4		0.997494
942	84		15		0.999986
948		90	10		0.90298
949			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain