SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12131

Length: 1458 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12131

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MADS-box protein n=3 Tax=Pinaceae RepID=O04406_PINRA	-	-	90%
FL-Next	tr=MADS-box protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	98%
Sma3	MADS-box protein	-	-	-

Source	Gene names
Sma3	PrMADS3;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15800.2	-	56%
RefSeq	Arabidopsis thaliana	NP_568322.1	developmental protein SEPALLATA 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002320084.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O04406

Fln msg:

Fln protein: MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQVMLDQIEELRQRERLLHEVNKSLQKKLSETEGRDVITGIEQTSNTNTGTNGPWDSSITNTAYALSHPQQNSNSSLHHVDCEPTLQIGYQPVAPESSAPPHQPPHNQTPNQYMQGWWV*

Protein Length: 263

Fln nts: ATGGGGATATATTATGCTGATGATATACGCACGTTCTCTCTCTAGGTTTCTTTTCTTGCTTTCTTTGTGATCCACAGAAAAAAACTACTCGCAGAGTAAAGCTGGGGGTCATTGAGGTAGATTAGATTCGACTCCCTGACCCTGGGAGGAGGAAGAAGAAGAAGAACAGGAGGAAGCGAAAATTTCTTAATAGTAACTAGAGAATAGCAGCGGGTGAAGAAGCAGAGGGATCTTGCA_-_ATGGGGCGGGGTCGGGTTCAGCTGAGGCGAATCGAAAACAAAATAAATCGACAAGTCACGTTTTCGAAGCGCCGGAACGGACTGCTGAAGAAGGCGTACGAGCTATCAGTGCTGTGCGATGCCGAAGTGGCGCTAATAATTTTCTCTACCAGAGGAAAGCTTTACGAGTTTGCCAGTTCCAGCATGAACAAGACGTTGGAAAGATACGAAAAATGTTCATATGCAATGCAAGATACCACAGGCGTTTCGGACCGGGAAGCACAGAATTGGCACCAAGAAGTTACAAAGTTGAAGGGTAAGGTTGAGCTCCTGCAGCGATCACAAAGGCATTTGTTGGGGGAAGATCTGGGTCCGTTAAATGTTAAGGAGCTACAGCAACTTGAACGTCAGCTGGAGGTTGCTCTGACACATCTTAGGTCAAGGAAAACGCAGGTAATGCTGGACCAGATTGAGGAACTTCGCCAAAGGGAACGGTTGCTACATGAAGTAAACAAGTCTCTGCAGAAAAAGCTTTCCGAAACCGAGGGAAGAGATGTAATAACTGGCATAGAGCAAACTTCTAATACTAATACTGGTACTAACGGGCCTTGGGACTCTTCTATCACAAACACTGCCTATGCTCTCTCACACCCTCAACAAAATTCAAATTCAAGCCTCCACCATGTGGACTGTGAACCCACGCTACAGATTGGTTATCAGCCTGTGGCTCCTGAAAGCAGCGCCCCTCCTCATCAGCCGCCGCACAACCAAACGCCGAACCAATACATGCAAGGATGGTGGGTTTGA___TATTTAACATTTATCATTATCAGTTTCACTTCAATCACAACAAAAGCCCAAAGCGTGGTAAGTTACGAAATTAGAATTATATTATCATTAAAAAAAATCCTATTTTCATTGAATAGCAGTAGGCTTGATTTTACTGCTATGGTAGAGGAGCTTTTATTGGGCAAGCAAACCCTACTGGTGTATTAGACCTTCTTGTCGACAAAGTTTAATTGCATAAATCTTGTACGCTAATCTGGCCACTAAAAGAGCGATGGGAAAAATAGTTGTCCCATTCACAACACATGATATGTTTAAATCCAACGTGTATGTGTCTGCAAAATATTATTATACACTACGTTTTATCACATGGTAGTCCATTCGCCATACTTTTCAAGTGTGAATTACTACAGTACTTTTATTCTAATAAATAGCATGTTATGAATCATGATTATAAAG

Fln Alignment:

Contig12131___MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQVMLDQIXXXXXXXXXXHEVNKSLQKKLSETEGRDVITGIEQTSNTNTGTNGPWDSSITNTAYALSHPQQNSNSSLHHVDCEPTLQIGYQPVAPESSAXXXXXXXXXXXXXYMQGWWV
O04406_______________MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVALTHLRSRKTQVMLDQIEELRQRERLLHEVNKSLQKKLSETEGRDVITGIEQTSNTNTGTNGPWDSSITNTAYALSHPQQDSNSSLHHVDCEPTLQIGYQPVAPESIVPPHQPPHNQTPNQYMQGWWV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1455	20	40	20	20	1.0
1456		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
152	166	GAA GAA GAA GAA GAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain