SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12120

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene12120
AATGTCCCAGCATGGAAAAGTTGGTATCTTTGGTAAAATTGCGGGTAGGTGGATGTCGGAAGCTGAAGAGCATACGGGGATTGACGCAGGCTACAGAACTTGAATCCCTCGTTGTTTCTGAGTGCTCTGAGTTAGAAGAACTCCCAAGTCTGGAAACAATGGTATCTTTGCGGAGGCTGTGGGCAACGAGATGTATGAAGCTGAAGAGCATACACGTGTTGGCTCACACATT

Ace file of the UniGene sp_v3.0_unigene12120

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	1.0e-06	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	TIR/P-loop/LRR	-	-	4.873e-06	-

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYF8

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 76 - 133

Fln protein: CPSMEKLVSLVKLRVGGCRKLKSIRGLTQATELESLVVSECSELEELPSLETMVSLRRLWATRCMKLKSIHVLAHT

Protein Length: 77

Fln nts: AATGTCCCAGCATGGAAAAGTTGGTATCTTTGGTAAAATTGCGGGTAGGTGGATGTCGGAAGCTGAAGAGCATACGGGGATTGACGCAGGCTACAGAACTTGAATCCCTCGTTGTTTCTGAGTGCTCTGAGTTAGAAGAACTCCCAAGTCTGGAAACAATGGTATCTTTGCGGAGGCTGTGGGCAACGAGATGTATGAAGCTGAAGAGCATACACGTGTTGGCTCACACATT

Fln Alignment:

Contig12120___PSMEKLVSLVKLRVGGCRKLKSIRGLTQATXXXXXXXXXXXXXXXXXXXXTMVSLRRLWATRCMKLK
A9NYF8_______________PSMETLVSLEELRTDGCVKLKSIRGLAQLTKLRLLDVSGCSELEELPCMESLTSLQELWAGGCVKLK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
173	50		50		1.0
174	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain