SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12084

Length: 2353 nt

UniGene Fasta

>sp_v3.0_unigene12084
GGAAAGTATATGATCGGATATACGATTATGATGTCTACAACGACATTGGGGACCCTGACAGCAGCCCAGAGCTGCTGAGACCAGTGTTGGGTGGATCCAACGACTTCCCATATCCTAGAAGATGCAGGACGGGTCGTCCACGATGTAAAACAGATCCCAATTCTGAAAGTCGAGCCAGTTCGATCTTCATTCCGCCGGACGAAAGGTTTCCTCATACGGATTTCACTGATTTTGGAGCCCACATCATCAATGCTTTCGCTAACTTGATTGTGCCTGAGATCACCGATGGAGCTGAAGCTGCCTTCAAAACATTCGAACAAATTGAACAGCTCTACGTTCAGGGATTTCAAAGTCCATATAACTCCGTCAGCAAACTTCTTCAGCACGAGAAGAATCCCCTTCAGATTATCAAGGGAATACTAGAAGCTGCCAAGGACAATCCACTGATAGATTTTGTGCGTCCTCAAGTTTATGCAGCTAATGAAAACGCGTGGAAGTCCGATATTGAGTATGCGCGGCAGGCGCTTGCTGGTTTAAATCCGATGACGATTCAATGCTTACAAACATTTCCCCCGTCCAGCGCCTTGGACCCAAATATCTACGGCCCACAGAAGAGTTCAATCACCGAGCAACACATACAAAAGTTCCTCGAAGGCCTTTCTGTGCAGCAGGCTGTTGCCTCAAAGAGGCTATTTATTCTGGACTACTATGAGGCATACATGCTCTATGCTGAACGCATCAATAAGCTATCGGAGGGAAGTAAGACATATGGCAGTCGCACACTTTTCTTCCTCACAAACGAGGGAGTGCTGAAGCCCGTGGCCATTGAGTTGTGTTTGCCTCCCACTGCTGAACAGGAATTAGGTGTTAGAAATGTCTACACTCCGGCTGAGGAGGGAACAGAGGAAGGAGCGTTATGGCTGCTAGCAAAAGTTCATGCCCGTGCCAACGACGCGGGTTACCATCAATTGATCAGTCATTGGTTAAGAACACATGCATCAATGGAGCCTTTCATTATAGCTACTCATAGACAATTGAGTAGAATGCATCCATTATATAAGTTACTGATACCTCATTATCTTGATACAATGGACATCAATCAAGCTGCTCGTCAAAGCTTAATAAATGCAGGGGGAATTATAGAACAAAGCTTTACTCCAGGAAAATATTCCATGGAGATGTCATCTAAGATATATAAAGATTGGAAGTTTAACGAACAAGGATTGCCTGCTGATCTTCTTAAAAGAGGAATGGCTGTCCCAGACCAAAGAGCACCCCATGGTCTAAGGCTTATGATTGAAGACTACCCATTTGCTGTAGATGGCTTAGAAGTATGGTTTGCAATGAAAGAATGGGTTTCAAACTACTTGACTTTCTTTTACAAGGATGATGCATCAATGAAAAGAGATCGAGAATTGCAAGCTTGGTGGAATGAGATTGTAAATGTTGGGCATGGAGATCTCAAGGATGATTTGAATAGATGGTACAAAATGGAGACGAAAGAGGAAGTTGTTGAAGCAGTGACAACTATTATGTGGCTTGCATCAGCTCACCACGCTGCAGTGAACTTTGGGCAATATGCTTATGGAGGTTACATGCCCAATCTTCCCACCACGAGTAGGCAACTTATTCCAGATAAAGGTTCTATAGAATACATTGAGATGGTGAGAGATATGGACGCATATTTCCTTAAAACTGTATCTAATCCATTCCAAGCAACCCTTGTCATGGCCATTTTAGAGATATTGTCAAAGCATGCAAAAAATGAAAGATATGTAGGGCAAATAGATGGATCAACAACAAAATGGGATGATGACAATGGCATAGCTGAAGCATTCAATCAATTTTCATCAAGGTTAGTGCAAGTGGAGAAGAATGTAACTTCCAGAAACAATAATCCTAATTTGAAGAATAGACTTGGTCCTACTCTAGTTCCTTACACCTTATTATATCCTAGCACCACTGATCTATCTAGGTCTGGTGGGCTCACTGGTCGTGGTGTCCCCAATAGTATATCCATTTAAATCGTTGACTACTAATATTTGTAGTGTGACAAAGTAAATGTCAATTTCTCCTCTTATTTTCTCCATCCAATGTGGAATCTCTATATTGTTAGAACTTGGGATATTAACATTCCCTCTTTAATGAAATCCAAATTCTTATTGGAATGTAAGATATCTTGTTGGGAATGAAAAAGAGATATTAATAGTCTCTCTTTGATGCAATCCAAATACCTATTGGAATGTGAGATATTGTGTGGGGAATTAGAGAGGCACTCCATGGAGTGATAGGTTGCTAGTTTCATGTTAGCTTGATCTTTTCTCACTCATTGGAATAGAAATATACATCTCGC

Ace file of the UniGene sp_v3.0_unigene12084

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	74%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g67560; At1g72520; At3g45140; AtLOX6; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F12B7.11; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00008869001; GSVIVT00013069001; GSVIVT00019960001; GSVIVT00022800001; GSV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G22400.1	LOX5 PLAT/LH2 domain-containing lipoxygenase family protein chr3:7927011-7931167 FORWARD LENGTH=886	48%
RefSeq	Arabidopsis thaliana	NP_188879.2	lipoxygenase 5 [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002311617.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: your sequence is shorter than subject: 674 - 930

Fln protein: KVYDRIYDYDVYNDIGDPDSSPELLRPVLGGSNDFPYPRRCRTGRPRCKTDPNSESRASSIFIPPDERFPHTDFTDFGAHIINAFANLIVPEITDGAEAAFKTFEQIEQLYVQGFQSPYNSVSKLLQHEKNPLQIIKGILEAAKDNPLIDFVRPQVYAANENAWKSDIEYARQALAGLNPMTIQCLQTFPPSSALDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRLFILDYYEAYMLYAERINKLSEGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLAKVHARANDAGYHQLISHWLRTHASMEPFIIATHRQLSRMHPLYKLLIPHYLDTMDINQAARQSLINAGGIIEQSFTPGKYSMEMSSKIYKDWKFNEQGLPADLLKRGMAVPDQRAPHGLRLMIEDYPFAVDGLEVWFAMKEWVSNYLTFFYKDDASMKRDRELQAWWNEIVNVGHGDLKDDLNRWYKMETKEEVVEAVTTIMWLASAHHAAVNFGQYAYGGYMPNLPTTSRQLIPDKGSIEYIEMVRDMDAYFLKTVSNPFQATLVMAILEILSKHAKNERYVGQIDGSTTKWDDDNGIAEAFNQFSSRLVQVEKNVTSRNNNPNLKNRLGPTLVPYTLLYPSTTDLSRSGGLTGRGVPNSISI*

Protein Length: 675

Fln nts: GGAAAGTATATGATCGGATATACGATTATGATGTCTACAACGACATTGGGGACCCTGACAGCAGCCCAGAGCTGCTGAGACCAGTGTTGGGTGGATCCAACGACTTCCCATATCCTAGAAGATGCAGGACGGGTCGTCCACGATGTAAAACAGATCCCAATTCTGAAAGTCGAGCCAGTTCGATCTTCATTCCGCCGGACGAAAGGTTTCCTCATACGGATTTCACTGATTTTGGAGCCCACATCATCAATGCTTTCGCTAACTTGATTGTGCCTGAGATCACCGATGGAGCTGAAGCTGCCTTCAAAACATTCGAACAAATTGAACAGCTCTACGTTCAGGGATTTCAAAGTCCATATAACTCCGTCAGCAAACTTCTTCAGCACGAGAAGAATCCCCTTCAGATTATCAAGGGAATACTAGAAGCTGCCAAGGACAATCCACTGATAGATTTTGTGCGTCCTCAAGTTTATGCAGCTAATGAAAACGCGTGGAAGTCCGATATTGAGTATGCGCGGCAGGCGCTTGCTGGTTTAAATCCGATGACGATTCAATGCTTACAAACATTTCCCCCGTCCAGCGCCTTGGACCCAAATATCTACGGCCCACAGAAGAGTTCAATCACCGAGCAACACATACAAAAGTTCCTCGAAGGCCTTTCTGTGCAGCAGGCTGTTGCCTCAAAGAGGCTATTTATTCTGGACTACTATGAGGCATACATGCTCTATGCTGAACGCATCAATAAGCTATCGGAGGGAAGTAAGACATATGGCAGTCGCACACTTTTCTTCCTCACAAACGAGGGAGTGCTGAAGCCCGTGGCCATTGAGTTGTGTTTGCCTCCCACTGCTGAACAGGAATTAGGTGTTAGAAATGTCTACACTCCGGCTGAGGAGGGAACAGAGGAAGGAGCGTTATGGCTGCTAGCAAAAGTTCATGCCCGTGCCAACGACGCGGGTTACCATCAATTGATCAGTCATTGGTTAAGAACACATGCATCAATGGAGCCTTTCATTATAGCTACTCATAGACAATTGAGTAGAATGCATCCATTATATAAGTTACTGATACCTCATTATCTTGATACAATGGACATCAATCAAGCTGCTCGTCAAAGCTTAATAAATGCAGGGGGAATTATAGAACAAAGCTTTACTCCAGGAAAATATTCCATGGAGATGTCATCTAAGATATATAAAGATTGGAAGTTTAACGAACAAGGATTGCCTGCTGATCTTCTTAAAAGAGGAATGGCTGTCCCAGACCAAAGAGCACCCCATGGTCTAAGGCTTATGATTGAAGACTACCCATTTGCTGTAGATGGCTTAGAAGTATGGTTTGCAATGAAAGAATGGGTTTCAAACTACTTGACTTTCTTTTACAAGGATGATGCATCAATGAAAAGAGATCGAGAATTGCAAGCTTGGTGGAATGAGATTGTAAATGTTGGGCATGGAGATCTCAAGGATGATTTGAATAGATGGTACAAAATGGAGACGAAAGAGGAAGTTGTTGAAGCAGTGACAACTATTATGTGGCTTGCATCAGCTCACCACGCTGCAGTGAACTTTGGGCAATATGCTTATGGAGGTTACATGCCCAATCTTCCCACCACGAGTAGGCAACTTATTCCAGATAAAGGTTCTATAGAATACATTGAGATGGTGAGAGATATGGACGCATATTTCCTTAAAACTGTATCTAATCCATTCCAAGCAACCCTTGTCATGGCCATTTTAGAGATATTGTCAAAGCATGCAAAAAATGAAAGATATGTAGGGCAAATAGATGGATCAACAACAAAATGGGATGATGACAATGGCATAGCTGAAGCATTCAATCAATTTTCATCAAGGTTAGTGCAAGTGGAGAAGAATGTAACTTCCAGAAACAATAATCCTAATTTGAAGAATAGACTTGGTCCTACTCTAGTTCCTTACACCTTATTATATCCTAGCACCACTGATCTATCTAGGTCTGGTGGGCTCACTGGTCGTGGTGTCCCCAATAGTATATCCATTTAA___ATCGTTGACTACTAATATTTGTAGTGTGACAAAGTAAATGTCAATTTCTCCTCTTATTTTCTCCATCCAATGTGGAATCTCTATATTGTTAGAACTTGGGATATTAACATTCCCTCTTTAATGAAATCCAAATTCTTATTGGAATGTAAGATATCTTGTTGGGAATGAAAAAGAGATATTAATAGTCTCTCTTTGATGCAATCCAAATACCTATTGGAATGTGAGATATTGTGTGGGGAATTAGAGAGGCACTCCATGGAGTGATAGGTTGCTAGTTTCATGTTAGCTTGATCTTTTCTCACTCATTGGAATAGAAATATACATCTCGC

Fln Alignment:

Contig12084___KVYDRIYDYDVYNDIGDPDSSPELLRPVLGGSNDFPYPRRCRTGRPRCKTDPNSESRASSI---FIPPDERFPHTDFTDFGAHIINAFANLIVPEITDGAEAAFKTFEQIEQLYVQGFQSPYNSVSKLLQHEKNPLQIIKGILEAAKDNPLIDFVRPQVYAANENAWKSDIEYARQALAGLNPMTIQCLQTFPPSSALDPNIYGPQKSSITEQHIQKFLEGLSVQQAVASKRLFILDYYEAYMLYAERINKLS-EGSKTYGSRTLFFLTNEGVLKPVAIELCLPPTAEQELGVRNVYTPAEEGTEEGALWLLAKVHARANDAGYHQLISHWLRTHASMEPFIIATHRQLSRMHPLYKLLIPHYLDTMDINQAARQSLINAGGIIEQSFTPGKYSMEMSSKIYKDWKFNEQGLPADLLKRGMAVPDQRAPHGLRLMIEDYPFAVDGLEVWFAMKEWVSNYLTFFYKDDASMKRDRELQAWWNEIVNVGHGDLKDDLNRWYKMXXXXXXXXXXXXIMWLASAHHAAVNFGQYAYGGYMPNLPTTSRQLIPDKGSIEYIEMVRDMDAYFLKTVSNPFQATLVMAILEILSKHAKNERYVGQIDGSTTKWDDDNGIAEAFNQFSSRLVQVEKNVTSRNNNPNLKNRLGPTLVPYTLLYPSTTDLSRSGGLTGRGVPNSISI
B8LLK5_______________KVSDRIYDYDVYNDIGEPGKSPELAREVLGGSKEFPYPRRCRTGRPPTKTDPKCESRVSFPNVNYIPPDERFPHTDFSDFGAHTLMAFANMIAPTIADLFEAAFETFEQIEHLYVRGFKSPINS-KKSLRQQPSPLQIVQGVLEAAEDNPLINFLRPQVLAVNELAWKTDREFARQALAGVNPLVIRCLETFPPSSSLDPNLYGPQKSTITEQHIKKFLDGLSLSQAVGSKRLFILDYYDPYMLYAERINKLSSDANKTYASRTLFFLTDEGELKPVAIELCLPPTADHK-AVRSVYTPGEEGTEEGALWRLARAHARVNDSGYHQLISHWLTTHAIMEPFIIATHRQLSKMHPLYKLLIPHYLNTMDINQAARQSLINADGVIELGFTPGKYSTEMSSKIYKEWKFNEQGLPADLLKRGMAVRNPTSPYGLKLVIEDYPYAVDGLEIWLSLKEWVSDYLSLYYKDDASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPNLKNRHGPAQVPYTLLYPNTSDLSESGGLIVQGVPNSISI

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
444	14	85			0.993533
446		85	14		0.993533
480		83	16		0.994512
516	10	90			0.90298
517	22		77		0.999999
518		90		10	0.90298
520			90	10	0.90298
526	30		70		1.0
529			10	90	0.90298
594	16	83			0.994512
611		83		16	0.994512
688	16		83		0.994512
690			83	16	0.994512
692		83		16	0.994512
700		33		66	1.0
718	83		16		0.994512
737	14	85			0.993533
740	85		14		0.993533
752			14	85	0.993533
793		75		25	0.996473
809		33	66		1.0
810	33			66	1.0
811		33	66		1.0
812	33	66			1.0
813		33		66	1.0
817	66			33	1.0
886	20	80			0.995493
888		80	20		0.995493
889		80		20	0.995493
917	16		83		0.994512
977	14	85			0.993533
1089	88			11	0.923564
1149	14	85			0.993533
1167	85	14			0.993533
1169	85			14	0.993533
1283		23		76	1.0
1410		16	83		0.999991
1413		83		16	0.999991
1414	10		90		0.90298
1503	88		11		0.923564
1646		14		85	0.999981
1682		83		16	0.999991
1804		33		66	0.997452
1811	33		66		0.997452
1812		33	66		0.997452
1815			66	33	0.997452
1963	33	66			0.997452
1964		66		33	0.997452
1965	66		33		0.997452
1966		66		33	0.997452
1981		66		33	0.997452
2088		88		11	0.923564
2101			88	11	0.923564
2152	85	14			0.993533
2155		71		28	1.0
2226	25			75	0.996473
2227	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain