SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12077

Length: 1881 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12077

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 720B2 n=2 Tax=Pinaceae RepID=C72B2_PINTA	-	-	95%
FL-Next	sp=Cytochrome P450 720B2; Pinus taeda (Loblolly pine).	-	-	98%
Sma3	Cytochrome P450 CYPB	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	0.0	-

Source	Gene names
Sma3	CYP720B2;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK5

Fln msg:

Fln protein: MGSGMMTETLTDSWLVGLLCFVLGFLLLQLYKLVWGASSRAYKLPPGSTGWPLIGETISFFRGINSTAQPRQFIQERERRYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKYGLLSVHGDLQKKLHGAAVNLLRFERLSVDFMEDIQNLLHITLAKWQAKRDIHLQEECHQLVLNLMAKQLLDLSPSKDTEEICEAFGHFSEALLAVPIKIPGTKYARGFKAREFLIKKIYESIEDRRQHPEAVHNDLLTKLLKEDLFSEEIIADFILFLLFAGHETSSRSMSFAIKFLTDCPRALEELKAEHDALLKRKGNLKNQKLNWDDYQSLKFTQCVIHETLRVGNFGPGVFRETKEDIKTKGGFVIPRGWTVYVFLTGTHLDEKYHSSALKFDPWRWQPHLQDQELLKNPSFMPFGGGARLCPGMHLAKMELALFLHNFVTKFRWEALQDDKISYFPFPRLTLD*

Protein Length: 480

Fln nts: TACATGTGGGGCATTCTCAGCAAGAAAGC_-_ATGGGATCGGGCATGATGACGGAGACTCTTACAGATTCGTGGCTAGTGGGCTTGCTCTGTTTCGTGCTGGGCTTCTTACTGCTTCAGCTCTACAAATTAGTGTGGGGGGCGAGCAGTCGAGCCTACAAGTTGCCGCCGGGTTCTACAGGGTGGCCACTGATTGGGGAAACCATCAGCTTCTTTCGAGGTATTAATTCCACTGCTCAACCACGCCAGTTCATTCAAGAGCGAGAGCGAAGGTATGGGGAGATATTCAGATCAAATTTGTTTGGAAGATCTCGAATTGTTGTGTCCGTGGATCCAGAATTCAACAAACATGTTCTGCAACACGAAGGCAGGCAATTTCAGGCCAACTATCCCAAACCTCTTCGAAATCTCATTGGCAAATATGGTTTGCTTTCGGTACACGGAGATCTCCAGAAGAAGTTACATGGGGCGGCTGTAAATTTGCTGAGGTTCGAGAGGTTGAGCGTGGACTTCATGGAGGACATACAGAACCTTCTGCACATCACTTTGGCCAAATGGCAAGCCAAGAGGGATATACATCTTCAAGAAGAGTGCCATCAGCTTGTTCTGAATTTGATGGCCAAACAATTGCTGGACTTATCGCCATCCAAGGACACTGAAGAGATTTGTGAAGCGTTTGGCCATTTCTCTGAAGCTCTCCTCGCTGTTCCAATCAAAATCCCGGGTACCAAGTATGCAAGAGGATTTAAGGCCAGGGAATTTTTGATAAAAAAGATTTACGAGAGTATCGAGGATAGAAGGCAGCATCCAGAAGCTGTACATAATGATTTGTTAACAAAACTCTTGAAAGAAGACTTGTTTTCAGAAGAAATTATAGCAGATTTTATACTGTTCCTGCTCTTTGCTGGTCACGAGACATCGTCCAGATCCATGTCATTCGCTATCAAATTTCTCACCGACTGTCCCCGAGCACTCGAGGAACTTAAGGCTGAGCACGACGCTCTGTTAAAGAGGAAGGGGAATCTAAAAAATCAAAAGCTCAATTGGGATGATTACCAGTCGTTGAAATTCACCCAATGTGTCATACATGAAACACTTCGTGTCGGCAACTTTGGTCCAGGAGTTTTCAGAGAAACAAAAGAAGACATTAAAACCAAAGGAGGCTTTGTCATTCCAAGAGGATGGACAGTGTATGTGTTTCTAACAGGCACCCATCTGGACGAGAAGTACCATTCTTCTGCACTCAAGTTTGACCCATGGCGCTGGCAACCGCATCTGCAAGATCAAGAGCTCTTAAAGAATCCCTCGTTTATGCCTTTTGGAGGAGGTGCCAGGCTCTGTCCAGGAATGCATCTGGCAAAGATGGAGCTGGCCCTCTTTCTTCATAACTTCGTTACCAAATTCAGATGGGAGGCACTGCAGGATGATAAGATCTCCTACTTTCCTTTTCCTCGCTTGACTCTTGACTAA___AGGCTTTCCGATCCGTCTACATCATCTTCAAGAACGAATGGATGATTAATCGCATTATAATATGATTTGATTTTTGCAGTATGGAGCGTTAAAAACAGTAAGCAAGTTTGAAGCATAAAACAATAATAGCCGCTCTGTGGACATATAACTATCATATTTCAAACATATTTATGTATTTCCTGTATTGAAGCCCGACAATTTGTGTTTCACTTTCATTCCCATCGGGTTGATGTATTAATCAGCTATTATCGCATATCCTTGTTTAAACAAACGAGATAACAAGGTTCCAAGTGATTAAAAAAGTGTTCCACATAATAGTATGGTTTACCAGAAAAATATTAAACAGTTGAGATAAATATAGTTGTACAAATTAAATGTGTGTTTTTTGCACAGTTACCAAGTTCGGCCGTATCGG

Fln Alignment:

Contig12077___MGSGMMTETLTDSWXXXXXXXXXXXXXXXXYKLVWGASSRAYKLPPGSTGWPLIGETISFFRGINSTAQPRQFIQERERRYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKYGLLSVHGDLQKKLHGAAVNLLRFERLSVDFMEDIQNLLHITLAKWQAKRDIHLQEECHQLVLNLMAKQLLDLSPSKDTEEICEAFGHFSEALLAVPIKIPGTKYARGFKAREFLIKKIYESIEDRRQHPEAVHNDLLTKLLKEDLFSEEIIADFILFLLFAGHETSSRSMSFAIKFLTDCPRALEELKAEHDALLKRKGNLKNQKLNWDDYQSLKFTQCVIHETLRVGNFGPGVFRETKEDIKTKGGFVIPRGWTVYVFLTGTHLDEKYHSSALKFDPWRWQPHLQDQELLKNPSFMPFGGGARLCPGMHLAKMELALFLHNFVTKFRWEALQDDKISYFPFPRL
Q50EK5_______________MGSGIMTETLTDSWLVGLLCLVLGFLLLQLYKLVWGASSRAYKLPPGSTGWPLIGETISFFRGINSTAQPRQFIQEREQRYGEIFRSNLFGRSRIVVSVDPEFNKHVLQHEGRQFQANYPKPLRNLIGKYGLLSVHGDLQRKLHGAAVNLLRFERLSVDFMEDIQNLLHITLAKWEAKRDIHLQEECHQLVLNLMAKQLLDLSPSKDTEEICEAFGHFSEALLAVPIKIPGTKYARGFKAREFLIKKIYESIEDRRQHPEAVHNDLLTKLLKEDSFSEEIIADFILFLLFAGHETSSRSMSFAIKFLTDCPRALEELKAEHDALLKRKGNLKNQKLNWDDYQSLKFTQCVIHETLRVGNFGPGVFRETKEDIKTKGGFVIPRGWTVYVFLTGTHLDEKYHSSALKFDPWRWQPHLQDQELLKNPSFMPFGGGARLCPGMHLAKMELALFLHNFVTKFRWEALQDDKISYFPFPRL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1540		50		50	1.0
1541	50			50	1.0
1617	16			83	0.994512
1657	16		83		0.994512
1660		50		50	1.0
1696	30		70		1.0
1698		20		80	0.999996
1718		10	90		0.90298
1770		20	80		0.995493
1777	80			20	0.995493
1798		25	75		0.996473
1836	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain