SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12062

Length: 1888 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12062

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alba multi-domain protein	-	-	3.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA/RNA-binding protein Alba-like	IPR002775	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76010.1	Alba DNA/RNA-binding protein chr1:28528505-28530488 REVERSE LENGTH=350	67%
RefSeq	Arabidopsis thaliana	NP_565124.1	Alba DNA/RNA-binding protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002300911.1	predicted protein, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR50

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 66 aas, putative chimeric sequence, your sequence is shorter than subject: 350 - 415

Fln protein: MDRYQRVEKPRPDVPISENEIRITTQGMPRNYITYAMTLLREKGASDIILKAMGRAISKTVTIAEIIKRRIPGLHQNTEISSADINYMWEPLEEGLLPLETTRHVSMITVMLSRVQLDTTSAGYQPPLPADQVKPVPDYEYEEEDSRQASRGRGRGRGRAIGRGGNVATVSYQNGDTSGYYNSVDNGWNRGRGRSRGRGRGFFGRGRGFYGGAEQDNGNYNDFGMGGQDFAPRGRGRGRGRSAGNAQYDDGNFNDNGMNAFDSAPRGMGGRGRGRFGDTGNYGGYGFVNREAGRRGRGRGRGRFGGNPQDGGNQNDYGMAGGDATIRGRGRGRGRGRGRGFRAQGQWAS*

Protein Length: 351

Fln nts: TTGTTAAAGCGAATTGATTGTTTATTTGTGGAAAAGCCCATTGAGCTTTCTGTGGGGGGAGCGTAACGAACGCATATCGCACCAAAGCTTGCTTGCCGAGAGGGCCACCACTGTCCGGGCATCCCACGGTTTAGACAAACCCATTTTCTCGGCCGAAAATCAATGTAAACTACAATCCATCTATACCAATCTACTGGTTTTCTCTCGAGTTTCGAACAGGTGTCAAGATCGAGTCCTGTGGCGCCTCCTGCATCTTTAAAGTCCAATCTGGTTTTGTGTATATACGTTGGCGTGGAGATTATTGAAGTTGCAGAGGGCTTAGGGTTTTAGGGCCGGGTTCGAGTTTCTGTGCCAGATAATCTTTTACAAC_-_ATGGATAGATATCAACGAGTGGAGAAGCCCCGCCCCGATGTTCCCATAAGTGAAAATGAGATTCGTATCACCACACAGGGGATGCCCAGGAACTACATTACATATGCAATGACATTGCTCAGAGAGAAAGGTGCATCTGATATTATCTTGAAGGCAATGGGAAGAGCAATAAGCAAGACAGTAACAATTGCAGAGATCATAAAGAGGAGGATACCTGGCCTTCATCAGAACACAGAAATAAGTTCTGCTGATATAAACTATATGTGGGAACCTCTTGAAGAAGGTTTATTGCCATTGGAAACAACAAGACATGTGTCAATGATAACAGTTATGCTATCTAGAGTACAACTCGACACAACATCTGCAGGTTATCAACCACCACTCCCAGCTGATCAAGTCAAGCCTGTGCCAGATTATGAATACGAGGAAGAAGATTCTCGACAAGCTAGCAGGGGCAGAGGACGCGGGCGTGGAAGGGCGATTGGCAGAGGAGGAAATGTTGCTACTGTAAGTTATCAGAATGGAGACACATCAGGTTATTATAATTCTGTAGACAATGGATGGAATCGGGGTCGTGGACGTAGCCGTGGGAGAGGCCGTGGTTTCTTTGGTCGGGGTAGAGGTTTTTATGGTGGTGCAGAACAAGATAATGGCAATTATAATGACTTTGGAATGGGTGGCCAGGATTTTGCTCCTCGAGGCAGAGGCCGTGGTAGGGGTAGGTCTGCTGGCAATGCACAATATGATGATGGAAATTTCAATGACAATGGTATGAATGCTTTTGATTCTGCTCCGCGAGGAATGGGTGGTCGAGGTAGGGGCAGGTTTGGTGATACTGGGAATTATGGTGGCTATGGCTTTGTTAATAGGGAAGCGGGCCGTAGAGGGCGGGGACGTGGTAGAGGTAGATTTGGTGGTAATCCTCAAGATGGTGGCAATCAAAATGACTATGGTATGGCTGGCGGGGATGCAACTATACGAGGCCGAGGTCGTGGTAGAGGCAGGGGAAGAGGAAGGGGGTTTAGAGCACAAGGCCAATGGGCATCCTGA___ATGGACTATTTGTATGGCAAGTAAAATGCCAAAGTGCAGAATAGGGTTTTTGGTAATGTAGGGATTTTGGTAATGTTTGGATTTCTGCTGCATGTGCAGGCAATTTTTAGATGGATATGATAATTTTTAGGTCACTGTTACGGTAAAATACTAGTAGCTCTTGACCTTTTCAGGATTATGTAGGCAGTTGTGTTTAGTTGTAGAAGGTATATTTTTTTCCAGCTCCTTATCCCTACTTCATTCCTGAAGTGGGTCCATCATATGCAAGAAGTTTTGGAGTTGTATCCGTTTTGTCGTAACGTAGATGTAGGGAAGGTGGCAATTATATTTGATACCTTATGAGCCAATTCCTTTATGTCATGTGATTATGTTATTATCCATTGTAATTGAAAACATGGTATTAATTCTACAATTTCTGGACCTATGTAGTTGAAATTAAGTTTTGATCATATATTCTGGACATTTATG

Fln Alignment:

Contig12062___MDRYQRVEKPRPDVPISENEIRITTQGMPRNYITYAMTLLREKGASDIILKAMGRAISKTVTIAEIIKRRIPGLHQNTEISSADINYMWXXXXXXXXXXXTTRHVSMITVMLSRVQLDTTSAGYQPPLPADQVKPVPDYEYEEEDSRQASXXXXXXXXXXXXXXXNVATVSYQNGDTSGYYNSVDNGWNXXXXXXXXXXXXXXXXXXXXXXXAEQDNGNYNDFGMGGQDFAPXXXXXXXXXSAGNAQYDDGNFNDNGMNAFDSAPXXXXXXXXXXXXXXXNYGGYGFVNREA
B8LR50_______________MDRYQRVEKPRPDVPISENEIRITTQGMPRNYITYAMTLLREKGASDIILKAMGRAISKTVTIAEIIKRRIPGLHQNTEISSADINYMWEPLEEGLLPLETTRHVSMITIMLSRIQLDTTSAGYQPPLPADQVKPLPDYEYEEEDSRQAGRGRGRGRGRAIGRGGNVATVSYQNGDTSGYYNSLDNGWNRGRGRSRGRGRAFFGRGRGFYGGAEQDNGNYNDFGMGGQDPVPRGRGRGRGRSAGNAQYDDGNFNDNGMSALDSAPRGMGGRGRGRFGDTGNYGGYGFGNREA

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
884		37		62	1.0
997		11		88	0.923564
1002		11	88		0.923564
1003		11	88		0.923564
1004	11			88	0.923564
1008	11	11	77		0.968132
1011			88	11	0.923564
1012	88			11	0.923564
1113		20		80	0.995493
1115		20		80	0.995493
1117	80		20		0.995493
1247	10		90		0.90298
1248			90	10	0.90298
1250		90	10		0.90298
1251		90	10		0.90298
1498			33	66	1.0
1535	33		66		1.0
1628			42	57	1.0
1629	33			33	1.0
1654		63		36	1.0
1818	8		91		1.0
1856	88			11	0.999952
1870	88		11		0.923564
1871		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain