SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12059

Length: 445 nt

UniGene Fasta

>sp_v3.0_unigene12059
GCTGATCGGGCTCAGAATTATCAGGATTGGGATATCCAGAGAATGAAGAGGATATTGCAGCGTCGTGACCTTGGCTGTCACTCAGTTTGTAGAACAACGTTCCTTTTGGAACATTTTCCGCAGTTTTGATCGTCTTTGGATTATGTACATTCTCTTTCTTCAGGCTGCTATTATTGTGGGATATCAGGGGTCAGGAAATCCTTGGAAAGAATTGAGTCACAGAGACACACAAGCACAGGTCCTTAGTGTCTTCATTACATGGGCAGGCTTACGTTTTTGGCAGTCTTTGCTTGATGTTGGAATGCAGTACAGTTTAGTGTCAAAAGAGACTGCACTAATTGGAATAAGGATGGTACTAAAAAGCATCGTGGCATTAGTATGGACCATTATCTTTGCTGTGTTCTACAGTCAGATGTGGGCTCAAAGGAATCATGATTTGAGATGG

Ace file of the UniGene sp_v3.0_unigene12059

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group]	-	-	1.0e-38	62%
FL-Next	sp=Callose synthase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Transferase, transferring glycosyl groups, putative	-	-	2.224e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	8.683e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		8.683e-11	%

Source	Gene names
Sma3	At4g04970; CALS11; GSL1; GSVIVT00004069001; GSVIVT00018581001; Os01g0754200; OsI_03222; OsI_03775; OsJ_03491; P0007F06.13; P0485G01.3; P0503C12.17-1; P0503C12.17-2; PHYPADRAFT_175718; PHYPADRAFT_183499; PHYPADRAFT_199665; POPTRDRAFT_1116276; RCOM_0936520;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	0.0	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G04970.1	ATGSL1, ATGSL01, GSL01, GSL1 glucan synthase-like 1 chr4:2537039-2542434 FORWARD LENGTH=1768	2.0e-40	55%
RefSeq	Arabidopsis thaliana	NP_567278.1	callose synthase 11 [Arabidopsis thaliana]	3.0e-40	55%
RefSeq	Populus trichocarpa	XP_002330632.1	predicted protein [Populus trichocarpa]	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S9U0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1360 aas, your sequence is shorter than subject: 148 - 1768

Fln protein: LIGLRIIRIGISRE*RGYCSVVTLAVTQFVEQRSFWNIFRSFDRLWIMYILFLQAAIIVGYQGSGNPWKELSHRDTQAQVLSVFITWAGLRFWQSLLDVGMQYSLVSKETALIGIRMVLKSIVALVWTIIFAVFYSQMWAQRNHDLRW

Protein Length: 149

Fln nts: GCTGATCGGGCTCAGAATTATCAGGATTGGGATATCCAGAGAATGAAGAGGATATTGCAGCGTCGTGACCTTGGCTGTCACTCAGTTTGTAGAACAACGTTCCTTTTGGAACATTTTCCGCAGTTTTGATCGTCTTTGGATTATGTACATTCTCTTTCTTCAGGCTGCTATTATTGTGGGATATCAGGGGTCAGGAAATCCTTGGAAAGAATTGAGTCACAGAGACACACAAGCACAGGTCCTTAGTGTCTTCATTACATGGGCAGGCTTACGTTTTTGGCAGTCTTTGCTTGATGTTGGAATGCAGTACAGTTTAGTGTCAAAAGAGACTGCACTAATTGGAATAAGGATGGTACTAAAAAGCATCGTGGCATTAGTATGGACCATTATCTTTGCTGTGTTCTACAGTCAGATGTGGGCTCAAAGGAATCATGATTTGAGATGG

Fln Alignment:

Contig12059___TQFVEQRSFWNIFRSFDRLWIMYILFLQAAIIVGYQGSGNPWKELSHRDTQAQVLSVFITWAGLRFWQSLLDVGMQYSLVSKETALIGIRMVLKSIVALVWTIIFAVFYSQMWAQRNHDLRW
Q9S9U0_______________TGFVEQRSFWNVYRSFDRLWILLLLYLQAAIIVATSDVKFPWQD---RDVEVALLTVFISWAGLRLLQSVLDASTQYSLVSRETYWLFIRLTLKFVVAVAWTVLFSVFYARIWSQKNKDGVW

SNPs (tot: 4)

Position	A %	G %	T %	Probability
142	33		66	0.997452
144	66	33		0.997452
210	83		16	0.994512
212	83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain