SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12001

Length: 555 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene12001
AATGTTCCAAGGATGTGAAGCCAAACAATGTGCAATTCGACGCAGATTTTGAAGCCCATCTCTCAGATTTTGGCCTGGATAGACTGGCAGCCATTCCAGCAGATCCCTCTTCATCTGCACCCACCCCTGCTGGCTCTCTGGGGTATGTTTCTCCTGAGATAAATTTAACAGGGCAGATGACAAAAGAATCCGATGTCTACAGCTTCGGAATTGTATTGTTGGAACTTCTTACTGGTAGGAGGCCGGTCATGTTCACCCAGGACGAAGATATAGTGAAATGGGTGAAGAGACAGCTTCAAACAGGGCAGATTTCAGAGCTGTTTGATCCAAGCCTTCTGGAACTGGATCCAGAATCTTCAGAGTGGGAGGAGTTTCTGCTGGCAGTGAAAGTGGCTCTTCTGTGCACAGCCCCTGATCCTCTGGACAGGCCGTCCATGACAGAGGTGGTGTTCATGCTTGAAGGTTGCAGGGTAGTAGTTGTTGGTCCAGACATTCCATCGTCCTCCGGTGGTCCTACGTCCCAGACCTCTCCAGTTTGACTCGTAAATATCTGTG

Ace file of the UniGene sp_v3.0_unigene12001 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Marchantia polymorpha RepID=A7VM29_MARPO	-	-	0.0	79%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	40%

Source	Gene names
Sma3	AT4G36180; AT4g36180; At1g75640; At4g36180; B1364A02.24; CLL6; F23E13.70; GSVIVT00001242001; GSVIVT00009046001; GSVIVT00014494001; GSVIVT00020450001; GSVIVT00036820001; H0404F02.1; LRR-RLK; MpRLK13; MpRLK3; OSJNBa0020J04.8; Os04g0576900; Os07g0152200; OsI

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36180.1	Leucine-rich receptor-like protein kinase family protein chr4:17120209-17123698 REVERSE LENGTH=1136	71%
RefSeq	Arabidopsis thaliana	NP_195341.2	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002301998.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 179 - 998

Fln protein: CSKDVKPNNVQFDADFEAHLSDFGLDRLAAIPADPSSSAPTPAGSLGYVSPEINLTGQMTKESDVYSFGIVLLELLTGRRPVMFTQDEDIVKWVKRQLQTGQISELFDPSLLELDPESSEWEEFLLAVKVALLCTAPDPLDRPSMTEVVFMLEGCRVVVVGPDIPSSSGGPTSQTSPV*

Protein Length: 180

Fln nts: AATGTTCCAAGGATGTGAAGCCAAACAATGTGCAATTCGACGCAGATTTTGAAGCCCATCTCTCAGATTTTGGCCTGGATAGACTGGCAGCCATTCCAGCAGATCCCTCTTCATCTGCACCCACCCCTGCTGGCTCTCTGGGGTATGTTTCTCCTGAGATAAATTTAACAGGGCAGATGACAAAAGAATCCGATGTCTACAGCTTCGGAATTGTATTGTTGGAACTTCTTACTGGTAGGAGGCCGGTCATGTTCACCCAGGACGAAGATATAGTGAAATGGGTGAAGAGACAGCTTCAAACAGGGCAGATTTCAGAGCTGTTTGATCCAAGCCTTCTGGAACTGGATCCAGAATCTTCAGAGTGGGAGGAGTTTCTGCTGGCAGTGAAAGTGGCTCTTCTGTGCACAGCCCCTGATCCTCTGGACAGGCCGTCCATGACAGAGGTGGTGTTCATGCTTGAAGGTTGCAGGGTAGTAGTTGTTGGTCCAGACATTCCATCGTCCTCCGGTGGTCCTACGTCCCAGACCTCTCCAGTTTGA___CTCGTAAATATCTGTG

Fln Alignment:

Contig12001___KDVKPNNVQFDADFEAHLSDFGLDRLXXXXXXXXXXXXXXXXSLGYVSPEINLTGQMTKESDVYSFGIVLLELLTGRRPV--MFTQDEDIVKWVKRQLQ-TGQISELFDPSLLELDPESSEWEEFLLAVKVALLCTAPDPLDRPSMTEVVFMLE
Q19AV8_______________RDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFK-----EEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
329	80		20		0.995493
336	80	20			0.995493
340	80			20	0.995493
399	16			83	0.994512
402			83	16	0.994512
403			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain