SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11955

Length: 1881 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11955

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	geranylgeranyltransferase type I beta subunit [Catharanthus roseus]	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	Gene names
Sma3	At2g39550; GGT_IB; GSVIVT00018478001; Os01g0150100; OsI_00411; OsJ_00386; PHATRDRAFT_24362; PHYPADRAFT_118171; POPTRDRAFT_832541; RCOM_0996650;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	CAAX-protein geranylgeranyltransferase activity	GO:0004662	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3		GO:0018348	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fumarate lyase	IPR000362	-	0.0	-
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G39550.1	ATGGT-IB, GGB, PGGT-I Prenyltransferase family protein chr2:16501666-16504144 FORWARD LENGTH=375	54%
RefSeq	Arabidopsis thaliana	NP_181487.1	geranylgeranyl transferase type-1 subunit beta [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002312088.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVH2

Fln msg: your sequence is longer than subject: 354 - 318

Fln protein: MGSFKRDLHVKSLLSMLEKVPSEYQGQDSHRLTLAYFVVSALDILNALDQVDAKQIMDWVYHLQVLPSDEAEDRHGYFYGFQGSSSVHLSKHAGVNFNNGGIGHLASTYSALALLKILGDDFTRIDCKGISRTLKNLQQPDGSFTSLHTGAETDLRFVFCAAAICFMLNDWSGMNVDKALSYIMDCQSYDAGFGLTPGAESHGGATYCAIATLKLMGYITDDPVSKRPSCSVIDFPSLVEWSLWKQRMDGGFQGRSNKDSDTCYSFWVGGSLKLMGFHDFYDLDALRCFLLSCQSKNGGFSKEPGEFPDLYHDYYGLCGFSLLEEPGLNPLCCELGISEQAKRRSSCAEDLCL*

Protein Length: 355

Fln nts: ATGGGGGAGAATTAGAGGTATGAGCCTCTTTGATCTCGCCAAAAGCAAGCGTGGTAAAGTTCAGAACCAGCAACATGGCATAACATGATTCGTTAAATGCCCAAATCCCACTTCAAGAGGTCCGTTCCAATCACAGAGTGATCGAGAATTCAGAAAGCAAGTCGTTCAATTGTGTTCTCCGCACATTTCATTTTTCAATTCTTATTATTGGGATCAAAAAGTGTTTGAGG_-_ATGGGGTCGTTTAAAAGAGATCTGCACGTGAAATCCCTTCTTTCAATGCTGGAGAAGGTGCCATCTGAGTACCAGGGACAGGACAGTCATCGTCTCACTCTCGCATACTTCGTTGTTTCGGCCCTGGACATCCTCAATGCTCTCGATCAGGTTGATGCAAAACAGATTATGGATTGGGTCTATCACCTTCAAGTCCTTCCATCAGATGAGGCTGAAGATAGACATGGATATTTTTACGGCTTCCAAGGATCATCTTCAGTCCACTTGTCAAAACATGCTGGAGTTAACTTTAACAATGGTGGTATTGGTCACCTAGCTAGCACTTACTCTGCTTTAGCATTATTAAAGATACTGGGTGATGACTTCACCCGAATTGATTGCAAAGGAATATCAAGAACATTGAAAAATCTTCAACAGCCTGATGGAAGTTTTACTTCTTTGCATACTGGTGCTGAGACAGACCTTCGCTTTGTCTTCTGTGCTGCGGCAATCTGTTTCATGCTGAATGACTGGAGTGGGATGAATGTGGATAAAGCTTTGAGCTATATTATGGATTGTCAGTCATATGATGCTGGTTTTGGGTTGACCCCTGGTGCAGAGTCTCATGGTGGTGCTACTTACTGTGCAATTGCTACGCTTAAGCTGATGGGCTATATTACAGATGATCCTGTTTCAAAAAGGCCATCATGTTCTGTGATTGATTTTCCATCACTGGTGGAGTGGAGTTTATGGAAGCAAAGGATGGATGGAGGCTTTCAAGGTAGATCCAATAAGGACAGTGATACATGCTACTCTTTTTGGGTGGGTGGTTCACTGAAACTCATGGGATTCCATGATTTTTATGACTTGGATGCTCTGCGTTGCTTTTTGTTGTCATGCCAGTCTAAGAATGGCGGCTTCAGTAAAGAGCCCGGGGAGTTTCCAGATTTATATCATGACTATTATGGACTTTGTGGGTTTAGTCTACTAGAGGAGCCTGGATTAAATCCACTTTGTTGTGAGTTAGGTATTTCTGAGCAAGCTAAAAGACGATCTTCATGTGCAGAAGATCTTTGCCTATGA___ATCTAACGTATGGCAAAATGCAGAATGATGGCACCTTCTTGCATATTTCCACAGCCTTCCAATCCTGTTTTATTTTGGATAGCTGAAACAAGCCTCTGGTCAATTCAACTGCCAAGGCGAGGAGGTGTTTGATTTTACTTTAGAATGGACAATCTTATCCATTCTTGTTCTTCAATACTCGGGAGCTTTAAATTGGGAATGTCCAAGTTATGGCATGCTAAAACTTCTTGTTGTCAAGTCCCAGGGAGTCATTTGCTGAGTTCTATGAAGTTGAAAATGAGCAGTGATTGTTTGGAGTGGAAGAGTTTTATTAATAATCAGAGTAGAATTGTTTTCTGAAATGTAGTTTCTATCTCATGACTACCTAGGTTTCTGATTTTATATGGTTGCTTGATGCATGCTTATTTTTGTGGTCATTTCCATCGTGTTCAGGGGTGTTAGTAGAAAACATGGAAGGTGAATTTTTTCAGGATCAAATTCAAAATGAGAGGTATCATTGTTTGAAGCAAGACAAAAATGAGATTCCATACGTACATTTACTCTTGGATGGTTTTTTTTAATAAACAAATATTTTAAAAAAAGGGTTGTC

Fln Alignment:

Contig11955___MGSFKRDLHVKSLLSMLEKVPSEYQGQDSHRLTLAYFVVSALDILNALDQVDAKQIMDWVYHLQVLPSDEAEDRHGYFYGFQGSSSVHLSKHAGVNFNNGGIGH---LASTYSALALLKILGDDFTRIDCKGISRTLKNLQQPDGSFTSLHTGAETDLRFVFCAAAICFMLNDWSGMNVDKALSYIMDCQSYDAGFGLTPGAESHGGATYCAIATLKLMGYITDDPVSKRPSCSVIDFPSLVEWSLWKQRMDGGFQGRSNKDSDTCYSFWVGGSLKLMGFHDFYDLDALRCFLLSCQSK-NGGFSKEPGEFPDLYHDYYGLCGFSLLEEPGLNPL
A9NVH2_______________MGELEIEKHTQFITSIEKKKDFDSMVMEHLRMSGAYWGLTALDLMGKLDAVDREEVVSWVLQCQ-------HDRGGF---------------------SGNIGHDPHILYTLSAVQILALL-DKLDAIDADKISAYIEGLQQEDGSFAGDEWG-EIDTRFSYCAVCCLSILRRLDKIDVGKAISYVASCKNFDGGFGCTPGGESHSGQIFCCVSALAISGALTH-----------VDRDLLGWWLCERQVKSGGLNGRPEKLADVCYSWWVLSSLTIIDRVHWIDKEKLKTFILDCQDKEHGGISDRPDDAVDVFHTFFGIAGLSLLEYPGLKPL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
984		33	66		0.997452
985	33	66			0.997452
986		33		66	0.997452
987	33			66	0.997452
989	33	66			0.997452
990	66		33		0.997452
993	33		66		0.997452
1448		87		12	0.992554
1492	90		10		0.90298
1832	93			6	0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain