SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11897

Length: 2638 nt

UniGene Fasta

>sp_v3.0_unigene11897
TATTGTGGGCTCTCTGAAAGCGCTCTGTTTCTCAAAAGAACCGCATATGCGTCCAGCTACGAATGCATTTCCTGCCCTCGTATACGCTTCGAGATTGAGTCCAGCAATAGCAGAAGGGTTTAGAAGGAAAGATGGAGACCATGGAGATGCCTGTGCCAGTGCCTCCCATCGCCTGGGTAACGATATCCAGCAACTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGTGAAGATTTCGGCATCAAAAGTGAGGATGAGGAGGAAGACGAAGATTCACTAGAGTTCGAGACTGGGTTCGGCAACATTGTAGTTGTAGACAATCTCCCGGTTGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATCTTTGGGCAGATTGGTACAATCAGGGAGAGAGGGCTTTGGATGCCGATTCATCCCGAAACCCAGAAGACTCAAGGATATTGCTTTATAGAGTACAACACCCCTCAGGAAGCACAAACAGCAAAAGATCAAACAAATGGATATAAGCTAGACAAATCCCACATATTTGCTGTGAACATGTTTGATGACTTTGATAAATACATGAAAGTATCAAACGAATGGATTCCTCCAGAAACAAAGGCCTATACACCTGGGGAAAATTTACAACAATGGCTAACAGATGACAAAGGACGTGATCAATTTGTTATCCGTGCGAACACTGACACAGAAGTTTATTGGAATGATCCTAGACATCTCAAACCAGATCTGGTCTACCGCCGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACATACCTGGCAACAGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGCAGTACAACCTTTAACCGCCTGATGCGCTTTGCACATCCACAGGTCAAGTTGATAGATTTTTCTCCTGGTGAAAAATTTCTGGTTACTTACAGCAGCCACGAGCCAAGCAATCCTCGAGATACACAGAGGGTTACCCTTAACATTTTTGAAGTGAGGACCGGTAAAGTATTGAGAGAGTTCAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGTTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGAGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCATAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATAACCTGGGCCGGGTTTCCAAGCTGGCTACCATTAAAGGAAAACAAGCAAATTCTCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGGCTGAAAGCCTTAAATGGTCTCCTTGAATTCTACAATGTCGATGAACTTGAGACAATGGCAACTGGTGAACATTTTATGGCAACTGATATTGAGTGGGATCCTACTGGAAGGTATGCTGCAACAGCAGTCACAACTGTTCATGAAATGGAAAATGGTTTTAACATATGGTCTTTCAATGGAAAGTTGTTGTACCGCATTCCCAAAGATCATTTCTATCAGCTATTATGGCGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGAGTGATTGTATAGCATGCATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGTGGTTTTCAACTGTTTTCATTGTCACACTCATAGTAGCATAGATACTTGTTTGTTGAAAGTTTTGTAGTATGGGCTTTGAAATGCCCAATTTCTCAAAAGAAAAATTGCAGTTCGACAGTTTGATCTGTTATTTATCGAATGATAGAATGTTTTGAGGGTACCTTTTTTGCATAGTCGGATTTTTTATGTAATAGATTTTCACTGTGATAATTTTCCCGAGTGGAAATGCATTAATTAATTT

Ace file of the UniGene sp_v3.0_unigene11897

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor 3 subunit B [Arabidopsis thaliana] sp\|Q9C5Z1.1\|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb\|AAG53615.1\|AF2	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	translational initiation	GO:0006413	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Translation initiation factor 2A, beta propellor-like domain	IPR013979	-	-
Sma3	Translation initiation factor eIF-3b	IPR011400	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G25780.1	EIF3B-2, EIF3B, ATEIF3B-2 eukaryotic translation initiation factor 3B-2 chr5:8973420-8976758 REVERSE LENGTH=714	74%
RefSeq	Arabidopsis thaliana	NP_568498.1	translation initiation factor 3 subunit B [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002308719.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWV8

Fln msg:

Fln protein: MRPATNAFPALVYASRLSPAIAEGFRRKDGDHGDACASASHRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEDEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPGENLQQWLTDDKGRDQFVIRANTDTEVYWNDPRHLKPDLVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGSTTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWVGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNNLGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGLLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTTVHEMENGFNIWSFNGKLLYRIPKDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDEEEEYEAEEVEVEELVDVTEEIASFGFEQMD*

Protein Length: 754

Fln nts: TATTGTGGGCTCTCTGAAAGCGCTCTGTTTCTCAAAAGAACCGCAT_-_ATGCGTCCAGCTACGAATGCATTTCCTGCCCTCGTATACGCTTCGAGATTGAGTCCAGCAATAGCAGAAGGGTTTAGAAGGAAAGATGGAGACCATGGAGATGCCTGTGCCAGTGCCTCCCATCGCCTGGGTAACGATATCCAGCAACTCAACATCGATTTTTCCAATGTTGACTTGGATTCAATACAGCTTCCTCCCGGTGAAGATTTCGGCATCAAAAGTGAGGATGAGGAGGAAGACGAAGATTCACTAGAGTTCGAGACTGGGTTCGGCAACATTGTAGTTGTAGACAATCTCCCGGTTGTCCCTCCAGAGAAGTTTGAGAAACTCGAAGGTGTTGTTCGCAAGATCTTTGGGCAGATTGGTACAATCAGGGAGAGAGGGCTTTGGATGCCGATTCATCCCGAAACCCAGAAGACTCAAGGATATTGCTTTATAGAGTACAACACCCCTCAGGAAGCACAAACAGCAAAAGATCAAACAAATGGATATAAGCTAGACAAATCCCACATATTTGCTGTGAACATGTTTGATGACTTTGATAAATACATGAAAGTATCAAACGAATGGATTCCTCCAGAAACAAAGGCCTATACACCTGGGGAAAATTTACAACAATGGCTAACAGATGACAAAGGACGTGATCAATTTGTTATCCGTGCGAACACTGACACAGAAGTTTATTGGAATGATCCTAGACATCTCAAACCAGATCTGGTCTACCGCCGTGGATACTGGACTGAAAGCTTTGTCCAGTGGTCATCTCTTGGAACATACCTGGCAACAGTGCACAGGCAGGGAGCAGCTATTTGGGGAGGCAGTACAACCTTTAACCGCCTGATGCGCTTTGCACATCCACAGGTCAAGTTGATAGATTTTTCTCCTGGTGAAAAATTTCTGGTTACTTACAGCAGCCACGAGCCAAGCAATCCTCGAGATACACAGAGGGTTACCCTTAACATTTTTGAAGTGAGGACCGGTAAAGTATTGAGAGAGTTCAAAGGAAGTGCTGATGATTTTGCAACTGGCGGAACTGGTGGTGTTGCTGGTGTGTCTTGGCCTGTATTCAGATGGGTTGGTGGCAGAGATGACAAATACTTTGCCCGCATTGGGAAAAATGCCATCAGTGTTTATGAAACAGATACCATGAGTCTCCTAGATAAGAAATCCCTCAAAGTTGACAATGTAATGGATTTCTGTTGGTCACCAACAGATCCAATACTAGCCTTGTTTGTTCCAGAAGGAGGAGGTGGTAACCAACCTGCAAAAGTGAGTCTTGTACAAATCCCTGGAAGGGAAGAACTGCGGCAGAAAAATCTGTTCAGTGTAAGTGATTGCAAAATGTATTGGCAAAGCAATGGGGACTACTTAGCAGTCAAAGTTGACCGCTATACAAAGACGAAGAAAAGTACATACACAGGTTTTGAACTTTTCCGAATAAAGGAAAGAGATATCCCCATAGAGGTTCTGGAATTAGAGAACAAGAATGACAAGATCATTGCATTCGCTTGGGAGCCCAAAGGCCATAGGTTTGCTATTATCCACGGGGATGGACCCAGGCCAGATATTAGTTTCTATTCAATGAGGAGCCCTAATAACCTGGGCCGGGTTTCCAAGCTGGCTACCATTAAAGGAAAACAAGCAAATTCTCTTTACTGGTCCCCCATTGGACGGTTTATTATTCTTGCAGGGCTGAAAGCCTTAAATGGTCTCCTTGAATTCTACAATGTCGATGAACTTGAGACAATGGCAACTGGTGAACATTTTATGGCAACTGATATTGAGTGGGATCCTACTGGAAGGTATGCTGCAACAGCAGTCACAACTGTTCATGAAATGGAAAATGGTTTTAACATATGGTCTTTCAATGGAAAGTTGTTGTACCGCATTCCCAAAGATCATTTCTATCAGCTATTATGGCGTCCAAGGCCACCCTCCCTTTTAAGCCCAGAGAAAGAGGAGGAGATTTCTAAGAATTTGAGAAAGTATAGCAAGAAGTATGAGGCTGAAGACCAGGATGTTTCATTGTTGTTGAGTGAGCAAGACAGGGAGAAACGGAAGAGATTGCAAGAGGAGTGGCAGGGCTGGGTCAATGAATGGAAACGCTTTCACGAGGAAGAGAAATTATATAGGCAGGAACTACGTGATGGAGAGCCTAGTGATGAAGAAGAGGAATATGAAGCAGAAGAAGTTGAAGTTGAAGAGTTAGTAGATGTTACGGAAGAGATTGCTTCATTTGGTTTTGAGCAGATGGACTGA___GTGATTGTATAGCATGCATCTATTTGTGCCTCCATACAGGCATATATGATTGTGCCTTCATGCAGGGAGATAGCTTGGGCAGAAAATGCAGTGGTTTTCAACTGTTTTCATTGTCACACTCATAGTAGCATAGATACTTGTTTGTTGAAAGTTTTGTAGTATGGGCTTTGAAATGCCCAATTTCTCAAAAGAAAAATTGCAGTTCGACAGTTTGATCTGTTATTTATCGAATGATAGAATGTTTTGAGGGTACCTTTTTTGCATAGTCGGATTTTTTATGTAATAGATTTTCACTGTGATAATTTTCCCGAGTGGAAATGCATTAATTAATTT

Fln Alignment:

Contig11897___HRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSXXXXXXXXXXXXXTGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHIFAVNMFDDFDKYMKVSNEWIPPETKAYTPGENLQQWLTDDKGRDQFVIRANTDTEVYWNDPRHLKPDLVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGSTTFNRLMRFAHPQVKLIDFSPGEKFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFXXXXXXXXXXXSWPVFRWVGGRDDKYFARIGKNAISVYETDTMSLLDKKSLKVDNVMDFCWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDISFYSMRSPNNLGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGLLEFYNVDELETMATGEHFMATDIEWDPTGRYAATAVTTVHEMENGFNIWSFNGKLLYRIPKDHFYQXXXXXXXXXXXXXXXXXXISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEEWQGWVNEWKRFHEEEKLYRQELRDGEPSDXXXXXXXXXXXXXXXXXXXXXIASFGFEQMD
A9NWV8_______________HRLGNDIQQLNIDFSNVDLDSIQLPPGEDFGIKSEDEEEEEDSLEFETGFGNIVVVDNLPVVPPEKFEKLEGVVRKIFGQIGTIRERGLWMPIHPETQKTQGYCFIEYNTPQEAQTAKDQTNGYKLDKSHVFAVNMFDDFDKYMKVPNEWIPPETKAYTPGENLQQWLTDEKGRDQYVIRSNTDTEVYWNDPRQLKPELVYRRGYWTESFVQWSSLGTYLATVHRQGAAIWGGGTTFNRLMRFAHPQVKLIDFSPGENFLVTYSSHEPSNPRDTQRVTLNIFEVRTGKVLREFKGSADDFATGGTGGVAGVSWPVFRWAGGRDDKYFARIGKNAISVYETDTMTLLDKKSLKVDNVMDFSWSPTDPILALFVPEGGGGNQPAKVSLVQIPGREELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDGPRPDVSFYSMRSPNNVGRVSKLATIKGKQANSLYWSPIGRFIILAGLKALNGQLEFFNVDELETMATGEHFMATDIEWDPTGRYAATSVTVVHEMENGFNIWSFNGKLLYRIPRDHFYQLLWRPRPPSLLSPEKEEEISKNLRKYSKKYEAEDQDVSLLLSEQDREKRKRLQEDWQGWVNEWKRLHEEEKLFRQDLRDGEPSDEEEEYEAEEVEVEELIDVTEEIASFGFEQLD

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
10	25	50	25		0.995533
12		75	25		0.996473
14			25	75	0.996473
15		75	25		0.996473
17			25	75	0.996473
247		77		22	0.999999
248	11		88		0.923564
363	75		25		0.996473
598		75		25	0.996473
899	11		88		0.923564
912	12			87	0.992554
991	85		14		0.993533
994	12		87		0.992554
996			87	12	0.992554
998			87	12	0.992554
1002	12	87			0.992554
1003		87		12	0.992554
1004		87	12		0.992554
1112	12		87		0.992554
1128	14		85		0.993533
1132		85	14		0.993533
1142	85		14		0.993533
1297	16			83	0.994512
1490	85			14	0.993533
1491	85		14		0.993533
1729		10		90	0.90298
1896	12		87		0.992554
1898			12	87	0.992554
1899			12	87	0.992554
1900			12	87	0.992554
1964		44		55	1.0
1968			71	28	1.0
2046	87	12			0.992554
2049	87		12		0.992554
2054		12	87		0.992554
2058	87	12			0.992554
2059	87			12	0.992554
2061	87			12	0.992554
2064	87			12	0.992554
2065		12	87		0.992554
2066	12		87		0.992554
2131			90	10	0.90298
2137		10	90		0.90298
2138		10	90		0.90298
2549	11			88	0.923564
2550		11	88		0.923564
2551	11			88	0.923564
2561	75	25			1.0
2616	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain