SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11877

Length: 1947 nt

UniGene Fasta

>sp_v3.0_unigene11877
TGCATGTTGGTGGAAGCTGTGCATGCCTTGATGAGCCACCTGCACAGGCCGCGTGATGCGGAATCATCCCGCAGGAGGATACAGCAGCTCCGCGAGCGGATCCCGCCGCCTATGATGACCTCGTCTGATCATATGCTTTTGTTGCGCGGACCTGTGGATGGTGGCGTTGAGCTTTTCATCCCGCGGAACCGTGCGTCGTATACGCTGGATGAGTTTATGGAGCACCTCAGTCAGCAGTTTCCTGACGGTGGCAGGTGCGGGCCTCCGCCTGCCTCCAGGAGCGCCGTTGACGCGATGCCGACGGTGAAGATTGCGCAGAAGCATCTGTGTATTGAGTCACACTGCGCTGTCTGTACCGATGAGTTCGAAATCGGGGGGGAGGCGAGGGAGATGCCGTGTAAACACATCTACCATGCCGATTGCATTCTTCCGTGGCTGGCTCAGCACAATTCGTGCCCTATTTGTCGACATGAGATGCCTACTGATGACGAGAGTTATGACCGGCAGAGCACAAGATCCCCAACAGAGCAGGAGTCATCAACATCCCAGTCCCAGGAACCCTCAGCTTCCCAATCCCATGTCGGGTTGACTATATGGGGGCTCCCCGGTGGGGGGTATGCAGTTGGCAGATTCTCGACACCTCCCCCTGTTGGCAGGAGTTCTTCTTCTTCTATGATTTTCAACAGAGGGCTTGGTGGCTCAGATTCAGGTAATAACACAAGTGGAGAAAGCCAAGGTAGGCGCAATCCATTCTCCTTTCTCTGGCCATTCCGCTCATCCAATTCGAGCCAAGAAGGCTCTTCAACTTCTACAAATGACCATCATGCCAGAAGATGGTTTGGTTAGAAGATTGCTGTGTTACCAGAAACTTGACCAGGAGATCCATTTCTCATTCCATTCCATTCCAATGCTTGTTCTCATTTCCATTCCATCTCGACACTACTTGAGTAGATTTATGTGTGTCGGTTCACTTTTGATTCCTCCAAAACCCTCTAGCCTCATTTGCCATTCAGTTTTTGGTTTCTGGTAGCATACCTTTAATGGAGACCTGCAGGTGCTCAACTGTGCATTGAAATAAAACCCTTGATAATAAGGGCATTTGCAAGTTTACATTTATAATTATCTTCATTTTGCAACCCACAATTATAGTCGGCTGGTTGCAACCAGTCTGTATGTTCATCTGGGCTTCCCACTGCTGGCATGTTTACAGAAGCTGTAATTGTAACCTTTGTGCTTTTTGCAAGAGCTTTTTGGGCTCTTCCAGAATCAGTTTAGTCAGTTCATTTTGTCATGCATATGATGAATGCCATGGATACATCAAGCCCAACGTTGGATTTAGTGTGGTGGTTCTCTGGGATTACTCTGAGGCAGCCATGGACTCTTCCTAGCTTGACTATTTCGGATTACCCTATTGGGCTGCTTTTATATTTACCTATGTAAATAAACCCTTAGATTTTCTTTTTGGGACCATTTAATGGCAGTAATTGTAGTGTTGCCGACTTTTGTACCCTTGTACCATGGTTTTTGACTTCTTCACTGTCAAAGATGGTATACAGGTCTTTTCAAAGCTGCAATTTTCACAAGGCTTGCATTTTCTGCAAGTACACTCAAATTTTATATGAAATTTAAATGTTCTATCCAGATGTCTTATATTGATAGAATTTTCCAAGCATTTTTTGGAGATGACACATAAGAACACGCCTGTTCATTTGAGCTCTACAAGTGTCAAATGTGACAAGTTCCACCTGAAGAAAATTGCTTGTATTTTTTGAAGTATGTATCGACATTTATGGCCTTCTTTACTCTGGTGGGTTTGGTCATTAAACAATCTAGTTAGATGCTTTTATGTCATATTATATTACAATGTTACCAGGTTATATAATTTGTACATGAATGATAGCATATCGTGGTTTACGAAAACTGCAATCCAAATAGTAGTTGACAGCC

Ace file of the UniGene sp_v3.0_unigene11877

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1117 multi-domain protein	-	-	3.0e-09	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Zinc finger protein, putative	-	-	6.964e-06	-

Source	Gene names
Sma3	At2g39720; At3g10810; At3g19950; At3g46620; At3g56575; At3g56580; F12A12.140; GSVIVT00015359001; GSVIVT00017293001; GSVIVT00021348001; GSVIVT00023324001; MtrDRAFT_AC157503g6v2; Os01g0972000; Os05g0110000; OsI_05393; OsI_20457; OsI_22117; OsJ_04929; OsJ_16

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWK1

Fln msg: your sequence is shorter than subject: 282 - 377

Fln protein: CMLVEAVHALMSHLHRPRDAESSRRRIQQLRERIPPPMMTSSDHMLLLRGPVDGGVELFIPRNRASYTLDEFMEHLSQQFPDGGRCGPPPASRSAVDAMPTVKIAQKHLCIESHCAVCTDEFEIGGEAREMPCKHIYHADCILPWLAQHNSCPICRHEMPTDDESYDRQSTRSPTEQESSTSQSQEPSASQSHVGLTIWGLPGGGYAVGRFSTPPPVGRSSSSSMIFNRGLGGSDSGNNTSGESQGRRNPFSFLWPFRSSNSSQEGSSTSTNDHHARRWFG*

Protein Length: 283

Fln nts: TGCATGTTGGTGGAAGCTGTGCATGCCTTGATGAGCCACCTGCACAGGCCGCGTGATGCGGAATCATCCCGCAGGAGGATACAGCAGCTCCGCGAGCGGATCCCGCCGCCTATGATGACCTCGTCTGATCATATGCTTTTGTTGCGCGGACCTGTGGATGGTGGCGTTGAGCTTTTCATCCCGCGGAACCGTGCGTCGTATACGCTGGATGAGTTTATGGAGCACCTCAGTCAGCAGTTTCCTGACGGTGGCAGGTGCGGGCCTCCGCCTGCCTCCAGGAGCGCCGTTGACGCGATGCCGACGGTGAAGATTGCGCAGAAGCATCTGTGTATTGAGTCACACTGCGCTGTCTGTACCGATGAGTTCGAAATCGGGGGGGAGGCGAGGGAGATGCCGTGTAAACACATCTACCATGCCGATTGCATTCTTCCGTGGCTGGCTCAGCACAATTCGTGCCCTATTTGTCGACATGAGATGCCTACTGATGACGAGAGTTATGACCGGCAGAGCACAAGATCCCCAACAGAGCAGGAGTCATCAACATCCCAGTCCCAGGAACCCTCAGCTTCCCAATCCCATGTCGGGTTGACTATATGGGGGCTCCCCGGTGGGGGGTATGCAGTTGGCAGATTCTCGACACCTCCCCCTGTTGGCAGGAGTTCTTCTTCTTCTATGATTTTCAACAGAGGGCTTGGTGGCTCAGATTCAGGTAATAACACAAGTGGAGAAAGCCAAGGTAGGCGCAATCCATTCTCCTTTCTCTGGCCATTCCGCTCATCCAATTCGAGCCAAGAAGGCTCTTCAACTTCTACAAATGACCATCATGCCAGAAGATGGTTTGGTTAG___AAGATTGCTGTGTTACCAGAAACTTGACCAGGAGATCCATTTCTCATTCCATTCCATTCCAATGCTTGTTCTCATTTCCATTCCATCTCGACACTACTTGAGTAGATTTATGTGTGTCGGTTCACTTTTGATTCCTCCAAAACCCTCTAGCCTCATTTGCCATTCAGTTTTTGGTTTCTGGTAGCATACCTTTAATGGAGACCTGCAGGTGCTCAACTGTGCATTGAAATAAAACCCTTGATAATAAGGGCATTTGCAAGTTTACATTTATAATTATCTTCATTTTGCAACCCACAATTATAGTCGGCTGGTTGCAACCAGTCTGTATGTTCATCTGGGCTTCCCACTGCTGGCATGTTTACAGAAGCTGTAATTGTAACCTTTGTGCTTTTTGCAAGAGCTTTTTGGGCTCTTCCAGAATCAGTTTAGTCAGTTCATTTTGTCATGCATATGATGAATGCCATGGATACATCAAGCCCAACGTTGGATTTAGTGTGGTGGTTCTCTGGGATTACTCTGAGGCAGCCATGGACTCTTCCTAGCTTGACTATTTCGGATTACCCTATTGGGCTGCTTTTATATTTACCTATGTAAATAAACCCTTAGATTTTCTTTTTGGGACCATTTAATGGCAGTAATTGTAGTGTTGCCGACTTTTGTACCCTTGTACCATGGTTTTTGACTTCTTCACTGTCAAAGATGGTATACAGGTCTTTTCAAAGCTGCAATTTTCACAAGGCTTGCATTTTCTGCAAGTACACTCAAATTTTATATGAAATTTAAATGTTCTATCCAGATGTCTTATATTGATAGAATTTTCCAAGCATTTTTTGGAGATGACACATAAGAACACGCCTGTTCATTTGAGCTCTACAAGTGTCAAATGTGACAAGTTCCACCTGAAGAAAATTGCTTGTATTTTTTGAAGTATGTATCGACATTTATGGCCTTCTTTACTCTGGTGGGTTTGGTCATTAAACAATCTAGTTAGATGCTTTTATGTCATATTATATTACAATGTTACCAGGTTATATAATTTGTACATGAATGATAGCATATCGTGGTTTACGAAAACTGCAATCCAAATAGTAGTTGACAGCC

Fln Alignment:

Contig11877___LVEAVHALMSHLHRPRDAESSRRRIQQLRERIPPPMMTSSDHMLLLRGPVDGGVELFIPRNRASYTLDEFMEHLSQQFPDGGRCGPPPASRSAVDAMPTVKIAQKHLCIESHCAVCTDEFEIGGEAREMPCKHIYHADCILPWLAQHNSCPICRHEMPTDDESYDRXXXXXXXXXXXXXXXXXXXXXXXXHVGLTIWGLPGGGYAVGRFSTPPPVGRSSSSSMIFNRGLGGSDSGNNTSGESQGRRNPFSFLWPFRXXXXXXXXXXXXTNDHHARRWFG
A9NWK1_______________MVEAVHALMSHLHRSRDAESSRGRIQQFRERIPQPLMPSSDHMLLLRGPVDGGVELFIPRNRR-YTLDEVMEQLTQQFPDGGRCGPPPASRSAVDAMPTVRIAEKHLCIESHCAVCTDEFEIGGEAREMPCKHIYHADCILPWLAQHNSCPVCRHEMPTDDENYDRQSARSPTEQEPSTSQSQEPSASQSHVGLTIWGLPGGGYAVGRFSTPPVGRSSSSSSVIFNRGLGGSDPSSNTSGESQGRRNPFSFLWPFRSSNSSQESSSTSTNDHHSRRWFG

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
27		66	33		0.997452
28		66	33		0.997452
29			33	66	0.997452
47	66		33		0.997452
292		83		16	0.994512
381	83		16		0.994512
382	16		83		0.994512
529			83	16	0.994512
530		83	16		0.994512
531	83		16		0.994512
583		66		33	1.0
1083		81	18		0.999994
1134			25	75	0.996473
1279	11			88	0.923564
1511		85	14		0.999981
1513		14		85	0.999981
1519	85			14	0.999981
1525		14		85	0.999981
1527		14		85	0.999981
1528	15		84		0.999986
1635	1	3		94	0.936582
1648	6	93			0.999153
1808			85	14	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
660	672	TTC TTC TTC TTC T	13
891	907	CATTC CATTC CATTC CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain