SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11863

Length: 3268 nt

UniGene Fasta

>sp_v3.0_unigene11863
AATGTAGTGGTTCAACGCAGAGTATGGGGACACAAAAGCCGGGTGAAACCCAGTAAAGAAGTGGCCTGGGAAGAAAATGGATGCCAAGATTCTGTTAGGGATTCCCAACTCGATTCCCAGCTGCATAGGGAGTTACAGACAAAACCAAGTTGGTTTTTGCCAGTTCCATGCTTGCCCCACTGGCACTGGCACTGGCTCTTCATGGAGGAGCCACGCTCAATTCTCAGACGATTTGAAGCAGAGGAGAGGCGATTTCAGAAGTTTTGCCTTTAACATAAAGGACATCTTTGTGAAAGATGCCTCTTCTAAAGTGGGCGTGGACCAAACGATTCATGGAGAAGTGATACTGCAAAAAGTATCTCTTTTCAACATCACGGATTACGCTGCAAGTGTTGCCGATGAAGCATCTGAGTTTTTGGGCAACAGAGTTTACCTCCAGCTGGTCAGCAGCCAAGAGGTGGATCCAGAAACTGGAGTGGGTAAAACTGTTGGTAAAGCATCTATTTTAGAGTGGAACCCCTTAGATGGACCCGTTGCTGGCGATACACACCACAAGATCACATTCGACTGGAAAGCTAATCTGGGAGTTCCGGGAGCATTCTTGATAAAGAACACTCACTCACGTGAGTTCTTTCTGAAATCTCTAACTCTTGATATCCCCGGTCAAGGTAAACTGCGCTTTAAATGCAACTCCTGGACATCCCCTTATCACGTCAGCAAGAGCGATCGTATTTTCTTCTCTAATAAGAGCTACCTGCCCGACGCAACGCCAGCAGGTCTGAAGAAGTTGAGGGAGAAAGATATGGTGGAACTGCGAGGAGATGGAACGGGAGAGAGGAAAGTATCGGATCGAATTTACGATTATGACGTTTACAATGATATTGGGGAACCAGATAGTAGTCCAGAGCTGGCAAGGGAAGTGCTGGGTGGATCCGAAGAATTCCCATATCCCAGAAGGTGTAGGACGGGCCGCCCACCAACGAAAACTGATCCCAGATGTGAAAGCCGAGTTAGTTTTCCAAACGTGAACTACATTCCACCGGACGAAAGGTTTCCTCATACAGATTTCTCGGATTTCGGAGCTCACGCCGTCATGGCTTTTGCCAATATGATTGCCCCTACCATTGAGGATTTATATGAATCAGCGTTCGAAACGTTCGAACAAATCGAACAACTCTACGTTCGGGGCTTCAAAAGTCCTTTTAATTCCAGGAAGAACCTTGGCGAAAAGCCGAGTCCCCTTCAGATTGTGCAGGGAATAGTGGAAGCCGCTGAAGACAATCCACTGATAAACTTTTTGAAACCACAAGTCCTGGCAGTCAATGAACTCGCGTGGAAGACAGATCGAGAATTTGCACGCCAGGCGCTTGCGGGGGTGAATCCTATGGTCATTCAGTGCTTAGAGACGTTTCCTCCATCTAGCAGCTTGGACCCAAATGTTTACGGTCCGCAGAAGAGCACGATCACAGAACAACACATCAAAAAATTCTTGGATGGCCTCTCACTGTCACAGGCTGTAGCATCCAAAAGGCTTTTTATCATGGACTACTACGATCCATACATGCTCTATGCTGAGCGCATCAATAAGATTTCCGACGAGATTAAATCATATGCCAGTCGCACACTTTTCTTCCTCACAGACGATGGAGAGCTGAAGCCTGTCGCCATCGAATTGTGTTTGCCTCCCACTGCTGATGGCAAAGCTGTTAGAAACGTCTACACTCCTGCTGAAGATGGAACAGAAGAAGGAGCCTTATGGCAACTGGCAAGAGCTCATGCCCGTGTCAATGATTCCGGTTATCATCAACTGATCAGCCATTGGCTGAGAACTCACGCGGTTATGGAGCCTTTCATTATAGCTACTCACAGACAACTGAGCAGAATGCATCCGCTCTACAAATTACTGGTACCTCATTATCTTAATACAATGGACATCAATCAAGCTGCTCGTCAGAGCTTGATAAATGCAGCTGGAGTTATCGAAAAAGGCTTTACTCCCGCTAAATATTCTTCTGAGATGTCATCTAAGATATACAAAGATTGGAAGTTTAACGAACAAGGATTGCCGGCAGATTTACTTAAAAGGGGGATGGCTGTCCGAGACCCTACATCACCCTATGGCCTCAAGCTTGTGATCCAAGACTACCCCTATGCCGTAGACGGCCTGGACATATGGTTTACTTTGAAACAATGGGTTTCAGACTACTTGTCCTTATATTACAAGGACGATGCTTCAATCAAAAAAGACCAAGAATTGCAGGCATGGTGGAATGAGATTGTAAATGTTGGGCACGGAGATCTCAAGGACGATCCGAGCAGATGGTACAAAATGGAGACAAGGGAAGAAGCGGTTGAAGCAGTCACCACCATCATCTGGATTGCTTCGGCTCACCATGCAGCTGTTAACTTTGGGCAATATTCATATGGAGGTTACATGCCCAATCTTCCCACCATGAGCAGACGCCTTATTCCAGAGAAAGGAACTGAAGAATACTCTGAGATGTTGAACGATGTAAATACATATTTCCTTAAAACCGTGTCCACTCCCAGACAAGCCACCCTTATCATGGCTGTTTTGGAGATTTTGTCACAGCATGCAAAGCACGAAGTATATTTGGGGCAAATTCATGGATCCACGCCAGATTGGGTCGATGATAGTGGAGTAGTGGAAGCATTCAATCGATTTTCATCAAGGTTAGTGCAACTGGAGAAGAATGTGATAGCCAAAAACAATGATCCCAATCTGAAGAACAGGCAAGGGCCTGCGCAAGTTCCATACACCTTACTGTATCCCAACACCAGCGATTTATCCGAGTCTGGTGGCCTCAACGTTCATGGAGTCCCCAACAGCATTTCCATCTAATCCAACACCAGTGATTTATCCGAGTCTGGTGGCCTCAACGTTCACGGAGTCCCCAACAGCATTTCCATCTAATCCATCTAATGCAAATTTCAGTAGGTAAAAAATTAATCGTAATAGTCTATAGTTATACAAACGCAAATAAGAATTGGGAGCAGATATCAAGATTCCTGTCTGCTTAATCTTTAGTGATGTCACGGCAGAAGTCTGCATCTCTCAAATGTCTTCTGGCAATGTAGCTTGAATTTCATGGTATCTTGGTGATGAGTTATTAACTTAAATTTCACGAAATTTATGGTTATGGTTTCAGACACGGAAGTTATAAACTCAGAACATGGTAAATGATGTTCACTTTGACTTTGAAATATTGTTGTAATTATGTTCCCCATAAAGTGATCTCTGAATCTA

Ace file of the UniGene sp_v3.0_unigene11863

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	0.0	86%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	49%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002328567.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg:

Fln protein: MDAKILLGIPNSIPSCIGSYRQNQVGFCQFHACPTGTGTGSSWRSHAQFSDDLKQRRGDFRSFAFNIKDIFVKDASSKVGVDQTIHGEVILQKVSLFNITDYAASVADEASEFLGNRVYLQLVSSQEVDPETGVGKTVGKASILEWNPLDGPVAGDTHHKITFDWKANLGVPGAFLIKNTHSREFFLKSLTLDIPGQGKLRFKCNSWTSPYHVSKSDRIFFSNKSYLPDATPAGLKKLREKDMVELRGDGTGERKVSDRIYDYDVYNDIGEPDSSPELAREVLGGSEEFPYPRRCRTGRPPTKTDPRCESRVSFPNVNYIPPDERFPHTDFSDFGAHAVMAFANMIAPTIEDLYESAFETFEQIEQLYVRGFKSPFNSRKNLGEKPSPLQIVQGIVEAAEDNPLINFLKPQVLAVNELAWKTDREFARQALAGVNPMVIQCLETFPPSSSLDPNVYGPQKSTITEQHIKKFLDGLSLSQAVASKRLFIMDYYDPYMLYAERINKISDEIKSYASRTLFFLTDDGELKPVAIELCLPPTADGKAVRNVYTPAEDGTEEGALWQLARAHARVNDSGYHQLISHWLRTHAVMEPFIIATHRQLSRMHPLYKLLVPHYLNTMDINQAARQSLINAAGVIEKGFTPAKYSSEMSSKIYKDWKFNEQGLPADLLKRGMAVRDPTSPYGLKLVIQDYPYAVDGLDIWFTLKQWVSDYLSLYYKDDASIKKDQELQAWWNEIVNVGHGDLKDDPSRWYKMETREEAVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGTEEYSEMLNDVNTYFLKTVSTPRQATLIMAVLEILSQHAKHEVYLGQIHGSTPDWVDDSGVVEAFNRFSSRLVQLEKNVIAKNNDPNLKNRQGPAQVPYTLLYPNTSDLSESGGLNVHGVPNSISI*

Protein Length: 930

Fln nts: AATGTAGTGGTTCAACGCAGAGTATGGGGACACAAAAGCCGGGTGAAACCCAGTAAAGAAGTGGCCTGGGAAGAAA_-_ATGGATGCCAAGATTCTGTTAGGGATTCCCAACTCGATTCCCAGCTGCATAGGGAGTTACAGACAAAACCAAGTTGGTTTTTGCCAGTTCCATGCTTGCCCCACTGGCACTGGCACTGGCTCTTCATGGAGGAGCCACGCTCAATTCTCAGACGATTTGAAGCAGAGGAGAGGCGATTTCAGAAGTTTTGCCTTTAACATAAAGGACATCTTTGTGAAAGATGCCTCTTCTAAAGTGGGCGTGGACCAAACGATTCATGGAGAAGTGATACTGCAAAAAGTATCTCTTTTCAACATCACGGATTACGCTGCAAGTGTTGCCGATGAAGCATCTGAGTTTTTGGGCAACAGAGTTTACCTCCAGCTGGTCAGCAGCCAAGAGGTGGATCCAGAAACTGGAGTGGGTAAAACTGTTGGTAAAGCATCTATTTTAGAGTGGAACCCCTTAGATGGACCCGTTGCTGGCGATACACACCACAAGATCACATTCGACTGGAAAGCTAATCTGGGAGTTCCGGGAGCATTCTTGATAAAGAACACTCACTCACGTGAGTTCTTTCTGAAATCTCTAACTCTTGATATCCCCGGTCAAGGTAAACTGCGCTTTAAATGCAACTCCTGGACATCCCCTTATCACGTCAGCAAGAGCGATCGTATTTTCTTCTCTAATAAGAGCTACCTGCCCGACGCAACGCCAGCAGGTCTGAAGAAGTTGAGGGAGAAAGATATGGTGGAACTGCGAGGAGATGGAACGGGAGAGAGGAAAGTATCGGATCGAATTTACGATTATGACGTTTACAATGATATTGGGGAACCAGATAGTAGTCCAGAGCTGGCAAGGGAAGTGCTGGGTGGATCCGAAGAATTCCCATATCCCAGAAGGTGTAGGACGGGCCGCCCACCAACGAAAACTGATCCCAGATGTGAAAGCCGAGTTAGTTTTCCAAACGTGAACTACATTCCACCGGACGAAAGGTTTCCTCATACAGATTTCTCGGATTTCGGAGCTCACGCCGTCATGGCTTTTGCCAATATGATTGCCCCTACCATTGAGGATTTATATGAATCAGCGTTCGAAACGTTCGAACAAATCGAACAACTCTACGTTCGGGGCTTCAAAAGTCCTTTTAATTCCAGGAAGAACCTTGGCGAAAAGCCGAGTCCCCTTCAGATTGTGCAGGGAATAGTGGAAGCCGCTGAAGACAATCCACTGATAAACTTTTTGAAACCACAAGTCCTGGCAGTCAATGAACTCGCGTGGAAGACAGATCGAGAATTTGCACGCCAGGCGCTTGCGGGGGTGAATCCTATGGTCATTCAGTGCTTAGAGACGTTTCCTCCATCTAGCAGCTTGGACCCAAATGTTTACGGTCCGCAGAAGAGCACGATCACAGAACAACACATCAAAAAATTCTTGGATGGCCTCTCACTGTCACAGGCTGTAGCATCCAAAAGGCTTTTTATCATGGACTACTACGATCCATACATGCTCTATGCTGAGCGCATCAATAAGATTTCCGACGAGATTAAATCATATGCCAGTCGCACACTTTTCTTCCTCACAGACGATGGAGAGCTGAAGCCTGTCGCCATCGAATTGTGTTTGCCTCCCACTGCTGATGGCAAAGCTGTTAGAAACGTCTACACTCCTGCTGAAGATGGAACAGAAGAAGGAGCCTTATGGCAACTGGCAAGAGCTCATGCCCGTGTCAATGATTCCGGTTATCATCAACTGATCAGCCATTGGCTGAGAACTCACGCGGTTATGGAGCCTTTCATTATAGCTACTCACAGACAACTGAGCAGAATGCATCCGCTCTACAAATTACTGGTACCTCATTATCTTAATACAATGGACATCAATCAAGCTGCTCGTCAGAGCTTGATAAATGCAGCTGGAGTTATCGAAAAAGGCTTTACTCCCGCTAAATATTCTTCTGAGATGTCATCTAAGATATACAAAGATTGGAAGTTTAACGAACAAGGATTGCCGGCAGATTTACTTAAAAGGGGGATGGCTGTCCGAGACCCTACATCACCCTATGGCCTCAAGCTTGTGATCCAAGACTACCCCTATGCCGTAGACGGCCTGGACATATGGTTTACTTTGAAACAATGGGTTTCAGACTACTTGTCCTTATATTACAAGGACGATGCTTCAATCAAAAAAGACCAAGAATTGCAGGCATGGTGGAATGAGATTGTAAATGTTGGGCACGGAGATCTCAAGGACGATCCGAGCAGATGGTACAAAATGGAGACAAGGGAAGAAGCGGTTGAAGCAGTCACCACCATCATCTGGATTGCTTCGGCTCACCATGCAGCTGTTAACTTTGGGCAATATTCATATGGAGGTTACATGCCCAATCTTCCCACCATGAGCAGACGCCTTATTCCAGAGAAAGGAACTGAAGAATACTCTGAGATGTTGAACGATGTAAATACATATTTCCTTAAAACCGTGTCCACTCCCAGACAAGCCACCCTTATCATGGCTGTTTTGGAGATTTTGTCACAGCATGCAAAGCACGAAGTATATTTGGGGCAAATTCATGGATCCACGCCAGATTGGGTCGATGATAGTGGAGTAGTGGAAGCATTCAATCGATTTTCATCAAGGTTAGTGCAACTGGAGAAGAATGTGATAGCCAAAAACAATGATCCCAATCTGAAGAACAGGCAAGGGCCTGCGCAAGTTCCATACACCTTACTGTATCCCAACACCAGCGATTTATCCGAGTCTGGTGGCCTCAACGTTCATGGAGTCCCCAACAGCATTTCCATCTAA___TCCAACACCAGTGATTTATCCGAGTCTGGTGGCCTCAACGTTCACGGAGTCCCCAACAGCATTTCCATCTAATCCATCTAATGCAAATTTCAGTAGGTAAAAAATTAATCGTAATAGTCTATAGTTATACAAACGCAAATAAGAATTGGGAGCAGATATCAAGATTCCTGTCTGCTTAATCTTTAGTGATGTCACGGCAGAAGTCTGCATCTCTCAAATGTCTTCTGGCAATGTAGCTTGAATTTCATGGTATCTTGGTGATGAGTTATTAACTTAAATTTCACGAAATTTATGGTTATGGTTTCAGACACGGAAGTTATAAACTCAGAACATGGTAAATGATGTTCACTTTGACTTTGAAATATTGTTGTAATTATGTTCCCCATAAAGTGATCTCTGAATCTA

Fln Alignment:

Contig11863___MDAKILLGIPNSIPSCIGSYRQNQVGFCQFHACPTGTGTGSSWRSHAQFSDDLK-----QRRGDFRSFAFNIKDIFVKDASSKVGVDQTIHGEVILQKVSLFNITDYAASVADEASEFLGNRVYLQLVSSQEVDPETGVGKTVGKASILEWNPLDGPVAGDTHHKITFDWKANLGVPGAFLIKNTHSREFFLKSLTLDIPGQGKLRFKCNSWTSPYHVSKSDRIFFSNKSYLPDATPAGLKKLREKDMVELRGDGTGERKVSDRIYDYDVYNDIGEPDSSPELAREVLGGSEEFPYPRRCRTGRPPTKTDPRCESRVSFPNVNYIPPDERFPHTDFSDFGAHAVMAFANMIAPTIEDLYESAFETFEQIEQLYVRGFKSPFNSRKNLGEKPSPLQIVQGIVEAAEDNPLINFLKPQVLAVNELAWKTDREFARQALAGVNPMVIQCLETFPPSSSLDPNVYGPQKSTITEQHIKKFLDGLSLSQAVASKRLFIMDYYDPYMLYAERINKI-SDEIKSYASRTLFFLTDDGELKPVAIELCLPPTADGKAVRNVYTPAEDGTEEGALWQLARAHARVNDSGYHQLISHWLRTHAVMEPFIIATHRQLSRMHPLYKLLVPHYLNTMDINQAARQSLINAAGVIEKGFTPAKYSSEMSSKIYKDWKFNEQGLPADLLKRGMAVRDPTSPYGLKLVIQDYPYAVDGLDIWFTLKQWVSDYLSLYYKDDASIKKDQELQAWWNEIVNVGHGDLKDDPSRWYKMXXXXXXXXXXXXIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGTEEYSEMLNDVNTYFLKTVSTPRQATLIMAVLEILSQHAKHEVYLGQIHGSTPDWVDDSGVVEAFNRFSSRLVQLEKNVIAKNNDPNLKNRQGPAQVPYTLLYPNTSDLSESGGLNVHGVPNSISI
B8LLK5_______________MDAKILLGIPISIPSCLGSYRLNQVGVCHFHACPTSL----SWRSHAQFSGDFKHMLANQRKGSFRSFAFNLKDIFLKESSSKEAVEQTIHGEVILQKVSLFNITDYAATIADEASELMGNRVYLQLVSSQEVDPETGVGKTVGEPSVLKWNPLDGPTAGDTHYEITFKWKAGLGVPGAFLIKNMHSREFFLKSLTLDIPDQGKLRFKCNSWVSPHHVSKSDRIFFSNKSYLPDATPIGLKKLREQDKVELRGDGTGERKVSDRIYDYDVYNDIGEPGKSPELAREVLGGSKEFPYPRRCRTGRPPTKTDPKCESRVSFPNVNYIPPDERFPHTDFSDFGAHTLMAFANMIAPTIADLFEAAFETFEQIEHLYVRGFKSPINSKKSLRQQPSPLQIVQGVLEAAEDNPLINFLRPQVLAVNELAWKTDREFARQALAGVNPLVIRCLETFPPSSSLDPNLYGPQKSTITEQHIKKFLDGLSLSQAVGSKRLFILDYYDPYMLYAERINKLSSDANKTYASRTLFFLTDEGELKPVAIELCLPPTADHKAVRSVYTPGEEGTEEGALWRLARAHARVNDSGYHQLISHWLTTHAIMEPFIIATHRQLSKMHPLYKLLIPHYLNTMDINQAARQSLINADGVIELGFTPGKYSTEMSSKIYKEWKFNEQGLPADLLKRGMAVRNPTSPYGLKLVIEDYPYAVDGLEIWLSLKEWVSDYLSLYYKDDASIKRDQELQAWWNEIVNVGHGDLKDDPSRWYKMETKEEVVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPNLKNRHGPAQVPYTLLYPNTSDLSESGGLIVQGVPNSISI

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
179	83		16		0.994512
449	85		14		0.993533
468	87			12	0.992554
471	12	87			0.992554
474		12	87		0.992554
476	12		87		0.992554
478			87	12	0.992554
479		12	87		0.992554
480	12		87		0.992554
482	87		12		0.992554
485	87			12	0.992554
486		87		12	0.992554
489	12		12	75	0.975346
492			87	12	0.992554
494	85	14			0.993533
496	85		14		0.993533
497			85	14	0.993533
500	14			85	0.993533
565		87		12	0.992554
732		25		75	0.996473
733	25			75	0.996473
2723			97	2	0.971188
2724		97		2	0.971188
2823	13		86		1.0
3150	86	13			0.999973
3251	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
178	196	CACTGG CACTGG CACTGG C	19

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain