SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11854

Length: 1455 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11854

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TATA-box binding protein [Phaseolus vulgaris]	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55520.1	TBP2, ATTBP2 TATA binding protein 2 chr1:20726150-20727483 REVERSE LENGTH=200	92%
RefSeq	Arabidopsis thaliana	NP_849812.1	TATA-box-binding protein 2 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002319167.1	global transcription factor group [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRB0

Fln msg:

Fln protein: MAEQVLEGSQPVDLEKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKIQQ*

Protein Length: 202

Fln nts: CGTCGTGACCTTGGCTGTTATGGGGCTCGACCGGCTCTCCGATCTCATATATTTTCTTCGAGACTCCTCTGCCGCAGCAGCTCTCTCCTCGCCCTTTTGAGGATTTACAATCCACATGCTCTATAAAAACCGGGACAAATCAAATCAACTCAATTCAAACATCACCTATAAATACAAAAGCTAACCAGATTCAAGAGATTCCCTCAGGATTTAGTATAAGAGAGGATCGAGATTTCATTTTCCGAGGGCATTATAAAAGCTTTTCTGTTTCATTCGATATCGATTGTGTAGTGAAGAGC_-_ATGGCCGAACAGGTCTTGGAAGGGAGTCAGCCAGTGGATCTCGAGAAGCATCCTTCAGGCATCGTTCCCACCCTCCAGAATATAGTGTCCACTGTAAACTTGGATTGCAAATTGGACTTGAAAGCCATTGCTCTTCAAGCTCGAAATGCAGAGTACAATCCCAAGCGTTTTGCAGCAGTCATAATGAGAATAAGGGAGCCCAAAACTACAGCACTGATATTTGCATCAGGGAAGATGGTTTGCACAGGTGCAAAAAGTGAACAACAATCAAAACTTGCTGCAAGAAAGTATGCTCGTATTATCCAAAAATTGGGCTTTCCTGCTCATTTCAAGGATTTTAAGATCCAGAATATCGTGGGGTCTTGTGATGTTAAATTTCCTATTAGATTGGAAGGGCTTGCATACTCCCATGGTGCTTTCTCAAGCTATGAACCAGAATTATTTCCAGGCTTAATTTATCGAATGAAACAGCCCAAAATTGTTCTTCTTATATTTGTTTCTGGAAAGATTGTCCTTACTGGAGCAAAGGTAAGGGATGAGACTTACACAGCCTTTGAGAATATATATCCGGTTTTAACTGAATTTAGGAAGATCCAGCAATGA___CAACATATGCCAGATCTCATGCATACCCTTCTGAGCTGTTCTGAGAGCATGACAATGGAGGCATGTGTGGCCAGCTCTTGTAACAACATGGTTTTGCTGAATTAGAAACTGCTTTTTTTCATTATATTTAGCTACTGTGTTGTGATGGGATTCATGGATTGTACATAGTTGATCTTCCAGACAATCATGGCAACTTTTGAGCAGGAAAAAATAATGCTTCTATAAGAATATTGGCCTTTCCTGTGCTCATATAAGTTTTCCGTGCCAGATTGTTCAAGTCATTTTCCTGGTTATGACTGGGTCTTCTGTAACAATGTTCTATTGTTTTTCTAAAAAGCTGGAAAAGCATATTTCATTAGTTCTATTTACTCGCATTTTGTACTGTATCCTTACAATGTCAAATCAAACGTCTCGTGGGATCTTTTGCTTTGAGATGATACCTGTTTGAATCCCTTGAGAAATGAATTTGTAGCAAGAATGACCAAAATTGCTTGTTAAAAGGTCAGTGTCATACCAGCTGGTATTGCAGAGATTTCCAGTGGTACTTGGCGAT

Fln Alignment:

Contig11854___MAEQVLEGSQPVDLEKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKIQQ
C0PRB0_______________MAEQVLEGSQPVDLEKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAHFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKIQQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
21			20	60	0.99255
22		20	60		0.99255
23			80	20	0.995493
24		20	80		0.995493
25	40		60		1.0
158	80	20			0.995493
659	40		60		1.0
660		40		60	1.0
661	40	60			1.0
787		16		83	0.994512
1013			90	10	0.999898
1263	11			88	0.923564
1351	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain