SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11829

Length: 437 nt

UniGene Fasta

>sp_v3.0_unigene11829
CGTCGTGACCTTGGCTGTCACTCATATTTGTAAAAGCGCAAAGAAAGGTTTGACACCATCACAGATCGGTGTCCTTCTCCGTGACGATCAAGGTGTTCGTCGTGACCTTGGCTGTCACTGGAAGCAAAATTTTGCGAATTTTGAAGGGTCATGGGCTTGCACCTCAAATTCCTGAAGATTTATATCATCTTATCAAGAAGGCAGTTGCTGTTAGGAAACATCTTGAGAAGAACCGTAAGGACAAGGATTCAAAATTCAGGCTGATATTGGTAGAAAGTAGAGTCCACCGCCTGGCAAGATACTACAAGCGAACCAAGAAACTTCCTCCCAATTGGAAATAGAAGAGGCCAACAAACCTTCCTTTCCTGCACAGGGTTGTGGTTGTAGATACTTGATCAACGTCATTTGTTGCATATGATCTCTTGCATCTACAATCA

Ace file of the UniGene sp_v3.0_unigene11829

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S13, putative [Solanum demissum]	-	-	2.0e-40	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	40S ribosomal protein S13	-	-	2.281e-14	-

Source	Gene names
Sma3	ACI39; At3g60770; At4g00100; CHLREDRAFT_169450; F6N15.7; GSVIVT00007258001; GSVIVT00026373001; GSVIVT00038451001; LOC_Os08g02400; LOC_Os08g02410; MICPUCDRAFT_49744; MICPUN_108906; OJ1699_E05.12; OSTLU_40147; Os02g0677800; Os07g0572900; Os08g0117200; Os08g

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Ribosomal protein S13/S15, N-terminal	IPR012606	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G00100.1	ATRPS13A, RPS13, PFL2, RPS13A ribosomal protein S13A chr4:37172-38123 FORWARD LENGTH=151	5.04467e-44	89%
RefSeq	Arabidopsis thaliana	NP_567151.1	40S ribosomal protein S13-2 [Arabidopsis thaliana]	7.00649e-44	89%
RefSeq	Populus trichocarpa	XP_002301281.1	predicted protein [Populus trichocarpa]	2.99878e-43	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRB2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 113 - 151

Fln protein: S*PWLSLIFVKAQRKV*HHHRSVSFSVTIKVFVVTLAVTGSKILRILKGHGLAPQIPEDLYHLIKKAVAVRKHLEKNRKDKDSKFRLILVESRVHRLARYYKRTKKLPPNWK*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTGTAAAAGCGCAAAGAAAGGTTTGACACCATCACAGATCGGTGTCCTTCTCCGTGACGATCAAGGTGTTCGTCGTGACCTTGGCTGTCACTGGAAGCAAAATTTTGCGAATTTTGAAGGGTCATGGGCTTGCACCTCAAATTCCTGAAGATTTATATCATCTTATCAAGAAGGCAGTTGCTGTTAGGAAACATCTTGAGAAGAACCGTAAGGACAAGGATTCAAAATTCAGGCTGATATTGGTAGAAAGTAGAGTCCACCGCCTGGCAAGATACTACAAGCGAACCAAGAAACTTCCTCCCAATTGGAAATAG___AAGAGGCCAACAAACCTTCCTTTCCTGCACAGGGTTGTGGTTGTAGATACTTGATCAACGTCATTTGTTGCATATGATCTCTTGCATCTACAATCA

Fln Alignment:

Contig11829___AVTGSKILRILKGHGLAPQIPEDLYHLIKKAVAVRKHLEKNRKDKDSKFRLILVESRVHRLARYYKRTKKLPPNWK
A9NRB2_______________SVTGSKVLRILKAHGLAPEIPEDLYHLIKKAVAVRKHLERNRKDKDSKFRLILVESRVHRLARYYKRVKKLPPVWK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
219	72		27		1.0
264		10	90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain