SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11816

Length: 641 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11816 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase HAC1 n=4 Tax=Arabidopsis RepID=HAC1_ARATH	-	-	7.0e-30	74%
FL-Next	sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	p300/CBP acetyltransferase-related protein	-	-	7.399e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone acetyltransferase.	EC:2.3.1.48	-	1.473e-08	-

Source	Gene names
Sma3	At1g16710; At1g79000; F17F16.8; F17F16_21; GSVIVT00029724001; HAC1; HAC12; HAC1501; HAC1502; HAC901; HAC902; Loc_Os02g04490; OSJNBa0026E05.8; OSJNBa0081C13.32; Os02g0137500; OsI_05772; OsJ_05304; PCAT2; PHYPADRAFT_10108; PHYPADRAFT_52; POPTRDRAFT_803030;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription cofactor activity	GO:0003712	Molecular Function	-
Sma3	transcription coactivator activity	GO:0003713	Molecular Function	-
Sma3	histone acetyltransferase activity	GO:0004402	Molecular Function	-
Sma3		GO:0004406	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein acetylation	GO:0006473	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, TAZ-type	IPR000197	-	-
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3		IPR009255	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79000.2	HAC1 histone acetyltransferase of the CBP family 1 chr1:29716639-29723984 REVERSE LENGTH=1741	5.0e-32	74%
RefSeq	Arabidopsis thaliana	NP_001185433.1	E1A/CREB-binding protein [Arabidopsis thaliana]	6.0e-32	74%
RefSeq	Populus trichocarpa	XP_002330477.1	histone acetyltransferase [Populus trichocarpa]	5.0e-33	64%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
484	50		50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain