SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11790

Length: 1264 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11790

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytosine-specific methyltransferase n=2 Tax=Hieracium RepID=D0V1M9_HIEPL	-	-	82%
FL-Next	Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B	-	-	81%
Sma3	Cytosine-specific methyltransferase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA (cytosine-5-)-methyltransferase.	EC:2.1.1.37	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cysteine and methionine metabolism	00270		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AT4g13610; AT4g14140; ATHIM; At4g08990; At4g13610; At5g49160; BrMET1a; BrMET1b; CHLREDRAFT_15852; CHLREDRAFT_8793; DMT901; DMT902; GSVIVT00003628001; GSVIVT00003629001; GSVIVT00035341001; K21P3.3; LOC_Os03g58400; LesMET; MET1; MET1-2; METII; NtMET1; OJ150

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	DNA (cytosine-5-)-methyltransferase activity	GO:0003886	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	negative regulation of flower development	GO:0009910	Biological Process	-
Sma3	zygote asymmetric cytokinesis in embryo sac	GO:0010069	Biological Process	-
Sma3	maintenance of DNA methylation	GO:0010216	Biological Process	-
Sma3	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14140.2	-	72%
RefSeq	Arabidopsis thaliana	NP_193150.1	DNA methyltransferase 2 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002305346.1	DNA methyltransferase [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: B1Q3J6-3

Fln msg: your sequence is shorter than subject: 211 - 1486

Fln protein: LLGRDAAGGAPLRSITVRDTIGDLPPVGNGADKLEIKYGNDPASWFQKQIRGQQSILYDHISKEMNELNYIRCQRIPKRPGADWRDLPEEKVKLSTGQLVDLIPWCLPNTADRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGLCFHPEQDRILTVRECARSQGFPDSYKFCGTIQSKHRQIGNAVPPPLATALGMKLKEVVDAKRLQA*

Protein Length: 212

Fln nts: TACTATTGGGTAGAGATGCTGCAGGAGGTGCCCCTCTTCGTTCCATTACCGTTAGGGATACGATTGGTGACTTGCCTCCAGTCGGCAATGGTGCAGACAAACTGGAAATTAAATATGGAAATGACCCAGCATCCTGGTTTCAGAAGCAGATACGTGGTCAGCAGTCTATCCTTTATGATCATATATCCAAGGAAATGAATGAGTTGAATTATATCCGGTGCCAGCGTATCCCCAAACGTCCAGGTGCTGATTGGCGGGATCTTCCTGAAGAAAAGGTGAAGCTGTCCACAGGGCAACTGGTGGATTTGATACCATGGTGCCTGCCAAACACTGCGGATCGACATAATCAGTGGAAAGGTTTGTTTGGGAGATTGGATTGGGAAGGGAATTTTCCTACTTCAATTACAGACCCACAGCCCATGGGCAAAGTAGGCTTGTGCTTCCATCCTGAACAAGATCGCATTCTTACTGTTCGGGAATGTGCTCGTTCCCAAGGCTTCCCTGACAGCTACAAGTTTTGTGGTACTATTCAGAGCAAACACCGCCAAATTGGCAATGCCGTGCCTCCGCCATTAGCAACAGCACTTGGAATGAAATTGAAGGAAGTAGTTGATGCCAAAAGATTGCAGGCTTAA___GAAAAATGACCTGTTCACTGTAATAGAAACTGGAGTCGCTGGACTTTTACTGAAGGAGTTTGTGGATGACACAATAAACCTTTTTTGGGACCAGGGACCCAAAAGCTTCTTTGTATAAATTTGAGATGGGCATATTTTAAATGCCATTGATTATTATGGGGCATTTCCTCCTGTTACTTGTGCAATTTGTGCACAGGGCAAGCGGAGTAAGCCAAGTGGATTCTCTCTCGATAGGCTGGATCACACTAATTCAAAGTTTGTAGGAAACTAAAGGTGGAACGGCCTATAAAAGAGCTTGGGGATATTCCAAGTTAAAACAGGAGTGTGGATCTGAAGCAGACATTATGTTCTGCTGGAGTAGTTTCGTGTCAATCAAAAGATGAGCATTCTTTTTATTGTGCAACATATGCAACGAAATAGACATTTTTGGTTGACTGTACATTTTGTTTTGCTCTTTTACGAAGTTATACTGCTTTGCCTATTGGAAGACATTCGTTTGAGATATTGGTCAACATCATTGCACTCTCAAACTATTGTTAGAGATTAGCAAGATCTGTCCAAGTGTTACAGATGTAACTAGAATAGATCTTATTCCAACCTGGTTATATCAAATGCTAAGAGGGATAAAG

Fln Alignment:

Contig11790___RDAAGGAPLRSITVRDTIGDLPPVGNGADKLEIKYGNDPASWFQKQIRGQQSILYDHISKEMNELNYIRCQRIPKRPGADWRDLPEEKVKLSTGQLVDLIPWCLPNTADRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGLCFHPEQDRILTVRECARSQGFPDSYKFCGTIQSKHRQIGNAVPPPLATALGMKLKEVVDAKR
B1Q3J6-3_____________KSTAGGAPFRAITVRDTIGDLPKVENGASKLLLEYGGEPISWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKRPGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWEGNFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDNYQFAGNIQSKHRQIGNAVPPPLAFALGRKLKEAVDAKR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
654	33			66	1.0
683		66		33	1.0
758	75		25		0.996473
760		25		75	0.996473
761			33	66	0.997452
762			66	33	0.997452
763	66	33			0.997452
765	66		33		0.997452
849	84		15		0.999986
851		84	15		0.999986
916			90	10	0.90298
946	12	87			0.992554
979	57		42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain