SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11735

Length: 1799 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11735

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phospholipase C [Arabidopsis thaliana] gb\|AAC32238.1\| putative phospholipase C [Arabidopsis thaliana] dbj\|BAC22507.1\| phosphatidylglycerol specific phospholipase C [Arabidopsis thaliana] gb\|AEC07902.1\| phospholipase C [Arabidopsis thaliana]	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Phosphatidylglycerol specific phospholipase C	-	-	2.227e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipase C.	EC:3.1.4.3	-	3.985e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Inositol phosphate metabolism	00562	3.985e-08	%
Sma3	Glycerophospholipid metabolism	00564	3.985e-08	%
Sma3	Ether lipid metabolism	00565	3.985e-08	%
Sma3	Metabolic pathways	01100	3.985e-08	%

Source	Gene names
Sma3	At1g07230; At2g26870; At3g03520; At3g03530; At3g03540; At3g48610; B1139B11.14-1; F10K1.6; GSVIVT00000809001; GSVIVT00000811001; GSVIVT00017959001; GSVIVT00022270001; GSVIVT00024115001; LOC_Os03g61130; LOC_Os03g63580; LOC_Os11g38050; LOC_Os11g38060; OJ1111

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	glycolipid biosynthetic process	GO:0009247	Biological Process	-
Sma3	phospholipid catabolic process	GO:0009395	Biological Process	-
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26870.1	NPC2 non-specific phospholipase C2 chr2:11457117-11459355 REVERSE LENGTH=514	69%
RefSeq	Arabidopsis thaliana	NP_180255.1	phospholipase C [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002314000.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC2

Fln msg:

Fln protein: MGKYCQKNRCAGLQLNKEMKGKSCKGSMARCATSALIMCCVLRIVCAGSSSINGPIKTIVILVMENRSFDHMLGWMKRLNPQIDGVTGQESNPISTTDPNSASLFFKDEAEYVDPDPGHSFQAIRDQIFGSENTSADPAPMNGFAQQATSLGGPNMSQTVMNGFRPEVVPVYNTLVSEFAVFDRWFASVPASTQPNRLYVHSATSHGATSNIPKLLANGYPQKTIFESIDESGLSFGIYYQNIPATLFYRNLRKLKYIGNFHSYSVQFKDHARNGKLPNYVVVEQRYMDSKLFPANDDHPSHDVAEGQKFVKEVYETLRSSPQWNETLFLITYDEHGGFFDHVPTPVKDVPSPDDIIGPDPFFFKFNRLGVRVPTIMISPWIDKGTVVHGANGPYPSSQFEHSSIAATVKKLFNLQSDFLSKRDAWAGTFEVVVQKRSSPRTDCPETLPDPPKIRQSEANEEAKLSEFQEELLQLAAQLNGDYTLRSYPEEIGKKMNVREGTKYMEDSVRRFFEASRLAKRLGADDHKIVKMRPSLTTRATSGGSTSKTTHP*

Protein Length: 554

Fln nts: _-_ATGGGGAAATACTGTCAGAAAAATCGATGCGCGGGACTCCAGCTGAACAAAGAGATGAAAGGCAAGAGCTGCAAGGGATCGATGGCGAGATGCGCTACATCGGCTTTAATTATGTGCTGCGTGTTGCGTATTGTTTGCGCAGGGAGTTCTAGCATTAACGGCCCCATAAAGACAATAGTCATTCTTGTTATGGAGAATCGATCTTTCGACCACATGTTGGGTTGGATGAAGCGGCTGAATCCACAAATCGATGGGGTCACCGGCCAGGAGTCGAATCCCATATCCACCACCGATCCCAATTCTGCGAGTCTTTTCTTCAAAGACGAGGCAGAGTATGTGGATCCGGATCCGGGGCACTCGTTTCAGGCCATACGAGACCAGATTTTTGGCTCCGAGAACACCTCCGCGGATCCTGCACCCATGAACGGATTCGCCCAGCAGGCGACTTCCTTGGGGGGACCCAACATGTCTCAGACTGTCATGAATGGCTTCAGACCCGAGGTTGTTCCCGTATATAACACTCTCGTAAGTGAGTTCGCGGTATTCGATCGGTGGTTTGCTTCGGTACCGGCCTCGACTCAACCCAACAGACTCTACGTTCATTCTGCGACTTCCCATGGAGCCACCAGCAATATCCCCAAGCTGTTGGCCAACGGATACCCGCAGAAAACCATCTTTGAATCGATAGACGAGTCGGGTTTGTCGTTCGGGATTTATTACCAGAACATCCCGGCTACTCTGTTCTACAGAAATCTCAGAAAACTAAAGTATATTGGCAATTTCCACTCCTACTCGGTTCAATTCAAGGACCATGCCAGGAATGGGAAGTTGCCCAATTATGTGGTTGTGGAGCAGCGCTACATGGATTCCAAGCTCTTCCCCGCGAACGACGACCATCCTTCGCACGATGTAGCCGAGGGCCAGAAATTCGTGAAGGAGGTGTACGAGACGCTCAGATCCAGCCCTCAGTGGAATGAGACGTTGTTCCTTATAACTTATGACGAGCACGGCGGATTCTTCGATCACGTTCCCACGCCTGTGAAGGATGTGCCTAGCCCCGACGACATTATCGGTCCCGACCCCTTCTTTTTCAAATTCAACAGGTTAGGGGTTCGAGTCCCCACTATCATGATTTCGCCATGGATTGACAAAGGAACAGTGGTACATGGGGCTAACGGACCATATCCATCGTCTCAGTTTGAGCATTCATCCATTGCTGCAACAGTCAAGAAGTTATTCAATCTACAATCCGATTTCCTGAGCAAGAGAGACGCCTGGGCTGGAACTTTCGAAGTTGTCGTACAGAAGCGCAGCAGCCCAAGAACAGACTGCCCAGAGACACTGCCGGACCCTCCAAAGATAAGGCAGAGCGAAGCGAACGAGGAAGCTAAGTTAAGCGAGTTTCAGGAGGAACTGCTGCAGCTGGCGGCTCAATTGAACGGAGATTATACTCTCAGGAGTTATCCAGAGGAGATCGGGAAGAAAATGAATGTGAGAGAGGGTACTAAATACATGGAGGATTCTGTGAGGCGTTTCTTTGAGGCAAGCCGATTGGCTAAAAGGCTCGGAGCTGATGACCATAAGATTGTAAAGATGAGACCTTCTCTCACCACCAGAGCCACCAGTGGAGGATCAACCTCCAAGACCACCCACCCCTAG___TGCTACACATATAATTACTTATTTTACAGATTCTGATTCTATGGCCTATAAAACAGTTGAATGCTATGGCATATAAAACAGATGAATGTAACTCAGTCCTTTGGGATAAAAATCTGTATGAAAATACAGTGGATTACTTT

Fln Alignment:

Contig11735___MARCATSALIMCCVLRIVCAGSSSINGPIKTIVILVMENRSFDHMLGWMKRLNPQIDGVTGQESNPISTTDPNSASLFFKDEAEYVDPDPGHSFQAIRDQIFGSENTSADPAPMNGFAQQATSLGGPNMSQTVMNGFRPEVVPVYNTLVSEFAVFDRWFASVPASTQPNRLYVHSATSHGATSNIPKLLANGYPQKTIFESIDESGLSFGIYYQNIPATLFYRNLRKLKYIGNFHSYSVQFKDHARNGKLPNYVVVEQRYMDSKLFPANDDHPSHDVAEGQKFVKEVYETLRSSPQWNETLFLITYDEHGGFFDHVPTPVKDVPSPDDIIGPDPFFFKFNRLGVRVPTIMISPWIDKGTVVHGANGPYPSSQFEHSSIAATVKKLFNLQSDFLSKRDAWAGTFEVVVQKRSSPRTDCPETLPDPPKIRQSEANEEAKLSEFXXXXXXXXXXXNGDYTLRSYPEEIGKKMNVREGTKYMEDSVRRFFEASRLAKRLGADDHKIVKMRPSLTTRATSGGSTSKTTHP
B8LKC2_______________MAKWAPLALIMYFVLGIDGAGMSSINGPIKTIVILVMENRSFDHMLGWMKRLNPQIDGVTGQESNPVSTSDLNSARVFFQNEAEYVDPDPGHSFQAIREQIFGSVDTSANPAPMNGFAQQATSLGGPNMSQTVMNGFRPEVVPVYNTLVNEFAVFDRWFASVPASTQPNRLYVHSATSHGATSNIPKLLADGYPQKTIFESIDESGLSFGIYYEDIPATMFYRNLRKLKYIGKFRSYSTEFKLHAKQGKLPNYVVVEQRYTDTKLLPANDDHPSHDVAEGQKFVKEVYETLRSSPQWNQTLFLITYDEHGGFFDHVPTPVKDVPSPDDIVGPDPFFFKFDRLGVRVPTIMISPWIDKGTVIHGPNGPYPSSQFEHSSIAATVKKLFNLKSDFLTKRDAWAGTFEDVVQKRSSPRTDCPETLADPPKIRKSEANEEAKISEFQEELVQLAAQLNGDYTLKSYPEEIGKKMNVREAKKYMGDSVRRFFEAGRLAKRLGADDHEIVKMRPSLTTRSTS-GPKSKTTHP

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
27	80			20	0.995493
32		20	80		0.995493
37			80	20	0.995493
99		20		80	0.995493
178	66		33		0.997452
286		25		75	0.996473
630	8	92			0.999718
633		92		8	0.999718
967		80		20	0.995493
982	83			16	0.994512
1238	11			88	0.923564
1240	88		11		0.923564
1241			11	88	0.923564
1242			11	88	0.923564
1269	88		11		0.923564
1323		86	13		0.999973
1324	86		13		0.999973
1660	12	75		12	0.975346
1661	12			87	0.992554
1662	87	12			0.992554
1667		12		87	0.992554
1693	80	20			0.995493
1713	75		12		0.975346
1714	87		12		0.992554
1715	87		12		0.992554
1716	87		12		0.992554
1731			87	12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain