SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11702

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11702

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Basic 7S globulin 2 small subunit, putative n=1 Tax=Ricinus communis RepID=B9RTU6_RICCO	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Basic 7S globulin 2 small subunit, putative	-	-	1.024e-14	-

Source	Gene names
Sma3	ACI25; At1g03220; At1g03230; EDGP1; F15K9.16; F15K9.17; GSVIVT00019909001; GSVIVT00022862001; GSVIVT00023702001; GSVIVT00023703001; GSVIVT00028479001; NEC4; OSJNBb0006J12.10; OSJNBb0006J12.11; OSJNBb0006J12.8; OSJNBb0006J12.9; Os05g0402900; Os05g0403300;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN22

Fln msg:

Fln protein: MASLPLVLIAAVIICFCQLPANASERRPRALVLQITKESQLYTVEIRQRTPLQMQRLVIDIEQDYTWVRCDKKRYNSSTYAVVGCSAQLCISYQYSGCGICFRRRAPYPGCNNQTCVVPYRQTLSVELGQDVMVLPSTDGLNPGPLVRIPKLAFACMLFPSLPIRRMDGVSGMSSSTLALPSQLSAAEGFSRKFAMCLPGGNQSGALFFGDGPLVFLPPPGRDLSLGLSHTPFIKNTVYTDDFYIGVQRIDVNGVPLAIDAEKLRIGTSGRGGTKMSTVVHYTQLATPIYNSIVAAFAKQKNLPRVASVAPFNACFNSSAVGSTRVGPAVPAIDLVLQSNATIWRIFGANSMVGVSDKVLCLGFVDAGEDPVTSIVIGTYQMQDNLLQFDLANSTLGFSSSLLFRQTTCSNFNFTTSA*

Protein Length: 420

Fln nts: AGCCATTGCGCGAA_-_ATGGCTTCACTCCCTCTGGTTCTGATCGCCGCCGTCATCATCTGTTTCTGTCAATTGCCTGCAAATGCGTCCGAGAGGCGCCCGAGGGCTCTCGTCTTGCAAATCACCAAAGAATCGCAGCTCTACACCGTCGAAATCCGGCAGAGAACCCCTCTGCAGATGCAGCGTTTAGTGATAGACATCGAGCAAGACTACACGTGGGTAAGATGCGACAAGAAAAGGTACAACTCCTCCACTTACGCCGTGGTTGGCTGCAGTGCGCAGTTGTGCATATCCTATCAGTATTCGGGCTGCGGCATCTGCTTTCGCCGCCGAGCCCCCTACCCCGGCTGCAACAACCAGACTTGTGTCGTGCCCTACCGACAGACTTTGAGTGTCGAACTCGGGCAGGACGTCATGGTGCTTCCCAGCACCGACGGTTTGAATCCCGGCCCCCTCGTCAGGATTCCGAAACTGGCTTTCGCCTGCATGCTATTTCCCTCCCTTCCGATACGTCGGATGGACGGCGTTTCAGGGATGAGTTCATCCACCTTGGCATTGCCATCTCAGCTCTCCGCCGCTGAGGGGTTCAGTCGTAAGTTTGCCATGTGTCTGCCAGGTGGCAATCAGTCTGGAGCTCTCTTCTTTGGCGATGGACCGCTCGTCTTCCTTCCACCACCGGGAAGAGACCTCTCCCTCGGCCTCAGCCACACTCCTTTCATCAAGAATACCGTCTACACAGACGACTTTTACATTGGTGTGCAGAGAATAGATGTCAATGGTGTCCCACTTGCAATCGACGCAGAGAAGCTGAGAATCGGCACGAGCGGCCGTGGCGGCACCAAGATGAGCACCGTGGTGCATTACACGCAACTAGCAACCCCGATCTACAATTCTATCGTGGCCGCCTTCGCCAAGCAAAAGAATCTCCCGCGCGTTGCTTCGGTAGCCCCCTTCAACGCATGTTTCAACTCGAGCGCTGTTGGGTCCACTCGCGTGGGGCCTGCCGTGCCGGCCATTGACCTTGTGCTGCAGAGCAACGCTACCATTTGGAGGATCTTTGGAGCTAACTCCATGGTGGGGGTGAGTGATAAGGTGTTGTGTCTGGGATTTGTTGATGCAGGGGAGGATCCGGTGACATCCATTGTGATAGGGACGTACCAGATGCAGGATAATCTGCTCCAATTCGATTTGGCCAACTCCACACTCGGCTTCTCCTCCTCTCTACTCTTCCGACAAACGACATGTTCCAATTTCAACTTCACGACTTCCGCATGA___TGAGTCATTTTCATGTGTAATAAGCTCTTGCAATAAACCATGAGCACCATAAATAAGAGAGATTTCTCACATTATGTTTAATTGCCGGGTACAGGAATATGCTTTTTTCTCTCTCTCTTCAGAGACCTTTGTTGTTGAAGTCTAGA

Fln Alignment:

Contig11702___MASLPLVLIAAVIICFCQLPANASERRPRALVLQITKE--SQLYTVEIRQRTPLQMQRLVIDIEQDYTWVRCDKKRYNSSTYAVVGCSAQLCISYQYSGCGICFRRRAPYPGCNNQTCVVPYRQTLSVELGQDVMVLPSTDGLNPGPLVRIPKLAFACMLFPSLPIRRMDGVSGMSSSTLALPSQLSAAEGFSRKFAMCLPGGNQSGALFFGDGPLVFLPPPGRDLSLGLSHTPFIKNTVYTDDFYIGVQRIDVNGVPLAIDAEKLRIGTSGRGGTKMSTVVHYTQLATPIYNSIVAAF---AKQKNLPRVASVAPFNACFNSSAVGSTRVGPAVPAIDLVLQSNA-TIWRIFGANSMVGVSDKVLCLGFVDAGEDPVTSIVIGTYQMQDNLLQFDLANSTLGFSSSLLFRQTTCSNFNFTTSA
B8LN22_______________MASLHLVLITAVIICFCHLPANASQRRPRALVTQITQDPASQRYTVEIRQRTPLRIQRLVLDIEEDYMWVRCDNKSYISSTYSPLGCSAQLCKSYQYSGCGTCYGSRGP--GCNNNTCVVAVQGSRSVELAQDVLVLPSSDGSNPGPLARFPQLAFACDLSSNRVISGTVGVAGMTSSTLALPSQLSAAEGFSRKFAMCLPSGNAPGALFFGDEPLVFLPPPGRDLSSQIIRTPLIKNSVYTDVFYLGVQRIEVGGVNVAIDAEKLRFDKDGRGGTKLSTVVRYTQLASPIYNSLEGVFTSVAKKMNITRVASVSPFGACFDSSGVGSTRVGPAVPTIDIVLQGNSTTTWRIFGANSMVRVNNKVLCLGFVDGGDNLQQSIVIGTYQMQDNLLQFDLATSTLGFSSSLLFGQTTCSNFNFTATS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
451		80	20		0.995493
456		80	20		0.995493
458		20	80		0.995493
459		20	80		0.995493
460	80			20	0.995493
462			20	80	0.995493
464		80		20	0.995493
466	80			20	0.995493
467	80	20			0.995493
472		20	80		0.995493
473	20	80			0.995493
549	40		60		1.0
573		55	44		1.0
576			66	33	1.0
596		11		88	0.923564
612	55		44		1.0
614		44	55		1.0
681	85			14	0.993533
690	14	85			0.993533
819	22		77		0.999999
822		44	44		1.0
831		88		11	0.923564
850	14		85		0.993533
910	50	50			1.0
917	50		50		1.0
942	66		33		0.997452
948		33		66	0.997452
1037		80	20		0.995493
1123			66	33	0.997452
1129		33	66		0.997452
1264	15			84	0.999986
1302		33	66		1.0
1311		88		11	0.923564
1314	44		55		1.0
1319	33	66			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain