SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11691

Length: 1551 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11691

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase-3, putative n=1 Tax=Ricinus communis RepID=B9RH55_RICCO	-	-	58%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Sma3	Pectinesterase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Starch and sucrose metabolism	00500	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	25.t00020; 26.t00027; ARATH11; ARATH14; ARATH15; ARATH2; ARATH31; ARATH48; ARATH49; ARATH50; ARATH53; ARATH62; ARATH63; ARATH66; ARATH67; ARATH68; ARATH9; At1g05310; At1g69940; At2g21610; At2g36700; At2g36710; At2g47280; At3g17060; At3g29090; At5g07410; A

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-
Sma3	pectin catabolic process	GO:0045490	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Ribonucleotide reductase	IPR000358	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21610.1	PE11, ATPE11 pectinesterase 11 chr2:9245161-9247025 REVERSE LENGTH=352	51%
RefSeq	Arabidopsis thaliana	NP_179755.1	pectinesterase 11 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002305435.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRK3

Fln msg:

Fln protein: MAQLKRLTSFCMFLTVMQAFSLQPAFSIGRMRRSHEQNGFLASRKLIDVARVIVVAKQKGMGDFTTVQEAINAVPVNNTNLILIRVKPGIDKEKVTIPAGKPFIILSGTTANNTVITWNDSAKSTGGTYYSATVSVFASDFMARYITIQNSYGPGDQAVALRISGDRSAFYGCRFLGYQDTVLDDSGRHYFKNCFIEGATDFICGDGQSLYEKCHLHTIPKLNGAITAQSRSSVSDDTGYVFLNCKITGNGLMYLGRAWGSYSRVVFAYTYIADIIFPEGWDNWNDPTRQSTVFYGMYKCSGPGAKDKGRVSWSRDLSDQEVAPFLTTGFIDGQNWISDIPSRLQRATSLVP*

Protein Length: 354

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGTGGTTTCTATCTAGCTCTGTGTTCTGTGGAATAATATCTTTTCATCACAGATCTCACCAAGATCTAGCGCTGTTGTTAGTTCC_-_ATGGCTCAGCTGAAGAGATTAACTTCTTTCTGTATGTTCCTTACGGTGATGCAGGCGTTTTCTCTTCAACCTGCCTTTTCTATTGGCAGGATGCGTAGGAGTCATGAGCAGAACGGCTTCTTGGCTTCTCGAAAACTTATTGATGTAGCGAGAGTTATAGTAGTAGCTAAGCAGAAGGGCATGGGCGATTTCACAACGGTCCAGGAAGCGATCAACGCAGTACCAGTTAACAACACGAACCTCATCTTAATTCGTGTTAAACCCGGCATCGATAAGGAGAAGGTCACGATTCCTGCAGGAAAACCGTTCATAATTCTGAGTGGCACAACTGCCAACAATACCGTCATCACTTGGAATGATAGTGCTAAATCGACCGGAGGGACATATTATTCCGCAACGGTGTCCGTATTTGCATCAGATTTCATGGCGAGATATATCACAATCCAGAATTCATATGGTCCGGGCGATCAAGCTGTGGCGCTAAGGATATCGGGAGATCGCTCTGCATTTTACGGATGCAGATTTCTTGGTTATCAAGACACTGTGTTGGATGACAGCGGGAGGCATTACTTCAAAAACTGTTTTATTGAAGGCGCCACAGATTTCATATGCGGTGATGGACAATCTCTTTATGAGAAATGCCATCTGCATACAATCCCGAAGCTAAATGGTGCAATTACAGCTCAGAGTAGATCTTCTGTTAGTGACGACACGGGCTATGTCTTTCTAAATTGCAAGATTACGGGCAATGGATTAATGTACCTCGGCAGGGCATGGGGAAGTTACTCGAGAGTTGTGTTTGCTTACACTTACATTGCTGACATCATCTTCCCGGAAGGTTGGGATAATTGGAATGATCCCACCAGACAATCGACTGTGTTCTATGGGATGTACAAATGCTCTGGACCTGGAGCAAAAGATAAAGGAAGAGTTTCATGGTCACGGGATCTAAGCGATCAGGAGGTTGCACCGTTTTTGACCACCGGTTTCATTGATGGGCAGAATTGGATAAGCGACATACCATCTCGCCTTCAGAGAGCTACCAGTTTGGTTCCATGA___CATGGTTGAATTATCATACCATTAATTTCTGGGTTTTAACACCGCCTTGATCATTCCAGTTTATATGTGTACGTTAAGCTGCATCCATGGATCATCTCAAGCAATTAGAGATTGCGATCAGCCAAATTTCCCATTGGTTGGTTGCTTTGAATAATTCAGTCATTCATATTCTTTAGCGGTTGTTCCCAACGAAAGTGTAGTCGACATTCCCAAACCGTTTATTCTCTCGTTTGTTATCGTTCCCCGTGCTGGATTTGTTGAACCATTGCTCCATCCACATTTTGTTGATAAAGAATCTTGTATTTTCAATGGTATCCACATCGGATTCGTGTATTTTTAATAGTATCCACAGCGACATTGATGTAATAACACAATTTAT

Fln Alignment:

Contig11691___QNGFLASRK--LIDVARVIVVAKQKGMGDFTTVQEAINAVPVNNTNLILIRVKPGIDKEKVTIPAGKPFIILSGTTANNTVITWNDSAKSTGG------TYYSATVSVFASDFMARYITIQNSYGP------GDQAVALRISGDRSAFYGCRFLGYQDTVLDDSGRHYFKNCFIEGATDFICGDGQSLYEKCHLHTIPKLNGAITAQSRSSVSDDTGYVFLNCKITGNGLMYLGRAWGSYSRVVFAYTYIADIIFPEGWDNWNDPTRQSTVFYGMYKCSGPGAKDKGRVSWSRDLSDQEVAPFLTTGFIDGQNWISD
B8LRK3_______________RNGFVKGRHGWRGPVGTRYIVVDKNGGGHFGSVQAAVDSIPNGNRERVIIEIRPGFYQEKVLVPQAKPYIIFQGAGMGRTVIEWHNKASDVGADGQELHTYNTASVTVLANHFTAKNISFKNSAPAPLPGMEGWQAASFRISGDKAYFLGCGFYGAQDTLCDDAGRHFFKECFIQGSIDFIFGNARSIYYKCELHSIARVFGAIAAQARTMPNEDTGFSFLHCKVTGTGPLYLGRAMGQYSRIVYAYSYFDDII--AGWDDWAQTSKDGTVFFGLYNCYGPGARAAQQISWVHELTPAQAQPFLVKTFINGRHWLED

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
102	16		83		0.994512
110		16		83	0.994512
125			83	16	0.994512
158	20		80		0.995493
162	80			20	0.995493
220	60	40			1.0
221	40		60		1.0
238		80	20		0.995493
263	20		80		0.995493
319			80	20	0.995493
380	33		66		0.997452
384	33			66	0.997452
386		66		33	0.997452
387			66	33	0.997452
388	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain