SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11688

Length: 1506 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11688

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA	-	-	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02130.1	ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 RAS 5 chr1:400350-401788 REVERSE LENGTH=203	83%
RefSeq	Arabidopsis thaliana	NP_171715.1	Ras-related protein RABD2A [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002304305.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKP5

Fln msg:

Fln protein: MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTAKKVVDYQTAKAFADEIGIPFLETSAKNAINVEDAFLTMAAEIKNRMASQPAMNSTRPATVQMKGQPVVPKSGCCS*

Protein Length: 204

Fln nts: CCACGTTGTGCCCTTTTGTTGCGCTGCTTACTCAGTTCCTTGTTCGTCCAACCGGAAGACGACGGTGGATGCCACGTGGCCATCGCCCTGGGCACCTTATTTCTTCAAATTCGCGCAGGCGGAAAGATTCAATCTCTTGCAAATCAGTTGGCTCCCCAGCATTCTATCAATTGCTGATCGAAATCACTCAAACTCGAGTCGAGATCTACCGTTCGAAGCCCTCTAGCCCTGCAATTGAGGGCCATTTGGACTTCTGCGGCTTAAAGTTCTCAGAAATTAGTGGATCTACGGGCCGATTTTTATCTTTTCGGTGACCTTTTCGGAGGATTTCAAATTTCCACC_-_ATGAATCCTGAATATGACTACTTGTTTAAGCTTTTGCTAATTGGTGATTCTGGTGTTGGAAAATCCTGTCTTCTTCTGAGGTTTGCGGATGATTCATATCTGGAGAGCTATATCAGTACAATTGGTGTTGATTTTAAAATTCGTACAGTGGAATTGGATGGGAAGACAATAAAACTTCAAATTTGGGACACCGCGGGACAAGAGCGGTTCAGAACAATAACAAGTAGCTACTATCGTGGTGCTCATGGTATTATTGTGGTATATGATGTTACTGACCAGGAGAGTTTCAACAATGTCAAGCAATGGTTGAATGAGATTGATCGCTATGCAAGTGAAAATGTGAATAAGTTGCTTGTTGGTAACAAGAATGATTTGACTGCTAAGAAAGTAGTTGATTATCAGACAGCCAAGGCATTTGCAGATGAAATTGGGATTCCATTTTTAGAGACAAGTGCTAAGAATGCAATAAATGTTGAGGATGCATTCTTGACTATGGCTGCTGAGATTAAAAACAGGATGGCAAGCCAACCTGCGATGAATAGCACAAGACCAGCCACAGTACAAATGAAAGGACAGCCTGTTGTCCCCAAAAGTGGTTGCTGTTCGTAG___ATAATTCACTTCTAGTTACATCATGGTTGCTGAAGTTTGTTATATAGTTACATCTTGGATTCAATTGATGGGCACCTTGCAATGGCTCCTAAGAGGTCCAGAATTTATGGAGATCTTGAATATCTGTTGCAGTTTGGACCTTGTTTAACGGGTTTCTACTTTTTAAATAATCTGTATAGCAATTTACTGTTGTACTTTGCCCAGTGTGACAAAACATTTCATATGTTCTCCAAGGATATAGCAGTTTGATCCTGGTATTTGCTAGAGGGATGTGAAATATTACCTCTTCATTACTTTACCAGTGCTCTTACCAAATTGCAGTTCTTATTGTTTAGTGCCTGCTGAATATTATTTTTTTCTGAAATAGAGCTATTCATTATTTTTTACATTGCAACAATAAGTTCAGTTTTGTTGGTCTTGCAGCAGAGAATTTATGGTACTAGAGGATGAGATTTTATGGTATTAATTTCCCACGAAATGTTTTTGTATTCCATGACCAATGCTTTCCCTGTTAGGAATGGAGTTTGATTACTTACGAATATGCTCCTTATTGGT

Fln Alignment:

Contig11688___MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTAKKVVDYQTAKAFADEIGIPFLETSAKNAINVEDAFLTMAAEIKNRMASQPAMNSTRPATVQMKGQPVVPKSGCCS
A9NKP5_______________MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTAKKVVDYQTAKAFADEIGIPFLETSAKNAINVEDAFMTMAAEIKNRMASQPAMNSTRPTTVQMKGQPVVPKSGCCS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1353		10		90	0.90298
1432	66	33			0.997452
1435	33		66		0.997452
1436		33		66	0.997452
1437	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain