SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11680

Length: 2369 nt

UniGene Fasta

>sp_v3.0_unigene11680
CCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGAAGACTTTAAAATAAGGTCAAAGACTGGTCTTGTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCAATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGGGGGTTTATTATAGGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGACGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACAGGCCACCATCTTCTGCTTTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGATATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAGAAGCTGACTAATTTTATGGAGAAACATGTTTATCAATTGGAAAAGGAATTTATCAGGCATGCTCAATCAGACAAGCGGTGGACAATTCACCCGTCTGAAGAGACACACAAAGATATAGCAAAAGCACAAGGCCTTTGGAACCTCTGGGTACCAGTTGATAGTGCTGCCATGGTTAAGAAGTTTTCTGATGAAAGAAAATTCGATATTCATATCAAGGATAGGCATGAGAGCTTGTTGCTTGGGGCTGGTCTTTCCAATCTTGAATATTCATATCTTTGTGAAATCATGGGTCGCTCAGCTTGGGCTCCTCAAATTTTCAATTGCAGTGCACCAGACACAGGAAATATGGAGGTATTGTTTCGTTATGGCACTGTGGAACAACAAAGGACATGGCTCATTCCTCTATTGGAGGGGAAAATTAGATCTGGATTTGCAATGACAGAGCCTCAAGTTGCATCCTCCGATGCCACTAACATAGAATGCTCAATTTTACGTGAAGGAGATCATTATATCATTAATGGTCGGAAATGGTGGACAAGTGGAGCAATGGATCCAAGATGCAAGATTCTGATAGTTATGGGAAAAACAGATATGAATGCACCTAAGCATAAACAGCAATCAATGGTTCTGGTTCCTATTGATACTCCTGGTGTCCACATAGAAAGAGCCTTGACTGTTTTTGGTTTTGATGATGCTCCTCATGGCCATGCAGAGATTGTCTTTGAGAATGTGCAGGTTCCTATCAAAAATGTCATTCTGGGAGAAGGCCGTGGTTTTGAGATTGCACAAGGACGGTTGGGTCCAGGTCGATTACATCATTGTATGAGATTAGTTGGTGCTGCCGAACGTGGCATTGAAATGATGGTAAAAAGAGCACTCCAAAGAAAAGCCTTTGGCAAGTTGATCGCACAGCATGGATCATTCTTATCTGATCTTGCCAAGTGTCGTTTAGAAATAGAGAAAACAAGATTTTTGGTACTGGAAGCTGCAAATCAATTGGACTTGTTTGGCAATAAAGTTGCCAGAGGAGCAATTGCCATGGCTAAGGTTGCAGCTCCAAACATGGCTTTGAAAGTACTTGATACAGCAATCCAAGTTCATGGTGCCGCAGGTGTAAGCACAGACTTCGTACTTTCCCACCTCTGGGCTTCTGCTCGAACTTTGCGATTAGCAGATGGCCCTGATGAGGTCCATCTTGGGACTATAGCAAAACTTGAATTGTCTAGAGCAAGGCTCTGAGATCAAGTTAGTATGTTTTATCTAGAAAATCCATCAAAAGCATTCATCTCAACTAGATAACATTCTCAGAAAAAAGCAAAATTTGGGGAAGGATACTTACAGGAGGACATGAAGAATGTTAAATTCTATATTTTGGTATGTTCCAACTTGTAAGTTTATTTGAGAACTACCATAGGGTGAAGCAGGGTATAAAGTTTCCATGATCCAAAGGGAACTATAATTTGTAAATGAGAAAAAGCTATCTTTCGAAGTCACCAGCTGATTAACACCTTTGCTATTCAATTTAAATATTTAGTTGAATAAACTGATTCAAATGATTCTTTTTGGGAGACACTTAACAGTTTGTATAATTATGAATCTGATTGAAAATTACTTATTTATAGATGTAGTTTCATTCCTATATTGGATCAATCATGTTTTACATATTTTTCTCTGGAGCAGTGCGGGAATCAT

Ace file of the UniGene sp_v3.0_unigene11680

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	acyl-CoA dehydrogenase [Arabidopsis thaliana] gb\|AAM14036.1\| unknown protein [Arabidopsis thaliana] gb\|AAN86198.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74461.1\| acyl-CoA dehydrogenase [Arabidopsis thaliana]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	ECs	Term	Type	e value	Identity
Sma3	Butyryl-CoA dehydrogenase.	EC:1.3.99.2	-	3.781e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid metabolism	00071		3.781e-07	%
Sma3	Valine, leucine and isoleucine degradation	00280		3.781e-07	%
Sma3	Butanoate metabolism	00650		3.781e-07	%
Sma3	Metabolic pathways	01100		3.781e-07	%
Sma3	Biosynthesis of secondary metabolites	01110		3.781e-07	%
Sma3	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	1.351e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	1.351e-08	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.351e-08	%
Sma3	beta-Alanine metabolism	00410	1.351e-08	%
Sma3	Propanoate metabolism	00640	1.351e-08	%
Sma3	Metabolic pathways	01100	1.351e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.351e-08	%

Source	Gene names
Sma3	ACD2; At3g06800; At3g06810; CHLREDRAFT_118751; F3E22.5; F3E22.6; GSVIVT00033039001; GSVIVT00033040001; MICPUCDRAFT_70897; MICPUN_107625; OSTLU_40224; Os07g0675000; OsI_27313; OsJ_25559; Ot01g00330; P0037D09.22-1; P0618H09.20-1; PHATRDRAFT_42907; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06810.1	IBR3 acyl-CoA dehydrogenase-related chr3:2146534-2150654 FORWARD LENGTH=824	66%
RefSeq	Arabidopsis thaliana	NP_187337.2	acyl-CoA dehydrogenase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002314363.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPF0

Fln msg: your sequence is longer than subject: 575 - 227

Fln protein: MSDVAYNCMCFLINNNEFPVPHYGFDNGIMPEGVPSLEEHLANYCAAAGTQWPAKDWKFYIAFSLFRSASIFAGVYYRWLKGNASGGERAKSAGRLAIYFIDTAWKFISRDSVLPDRPPSSAFGNVPLETDVSLSHIPAYSQDMTIKGNGFVPSARVQELRKKLTNFMEKHVYQLEKEFIRHAQSDKRWTIHPSEETHKDIAKAQGLWNLWVPVDSAAMVKKFSDERKFDIHIKDRHESLLLGAGLSNLEYSYLCEIMGRSAWAPQIFNCSAPDTGNMEVLFRYGTVEQQRTWLIPLLEGKIRSGFAMTEPQVASSDATNIECSILREGDHYIINGRKWWTSGAMDPRCKILIVMGKTDMNAPKHKQQSMVLVPIDTPGVHIERALTVFGFDDAPHGHAEIVFENVQVPIKNVILGEGRGFEIAQGRLGPGRLHHCMRLVGAAERGIEMMVKRALQRKAFGKLIAQHGSFLSDLAKCRLEIEKTRFLVLEAANQLDLFGNKVARGAIAMAKVAAPNMALKVLDTAIQVHGAAGVSTDFVLSHLWASARTLRLADGPDEVHLGTIAKLELSRARL*

Protein Length: 576

Fln nts: CCAGATCGAAGTCCAAGGATGTTGGAACTCATTGATTGGCTCAAGCAACACATACCAGCTGAAGACTTTAAAATAAGGTCAAAGACTGGTCTTGTCATGGAGACTTTCGGATTGATAATCTTCTGTTCCATCCATCAGAGGAACGTGTCATTGGTGTTTTAGATTGGGAATTATCAACATTGGGGGACCCA_-_ATGTCTGATGTTGCTTACAACTGCATGTGTTTTCTCATCAACAACAATGAGTTTCCAGTTCCTCATTATGGCTTTGATAATGGGATAATGCCAGAAGGAGTTCCTTCTCTGGAAGAGCATCTGGCGAATTATTGTGCTGCAGCTGGTACCCAGTGGCCTGCTAAAGATTGGAAGTTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGGGGGTTTATTATAGGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGACGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACAGGCCACCATCTTCTGCTTTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGATATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAGAAGCTGACTAATTTTATGGAGAAACATGTTTATCAATTGGAAAAGGAATTTATCAGGCATGCTCAATCAGACAAGCGGTGGACAATTCACCCGTCTGAAGAGACACACAAAGATATAGCAAAAGCACAAGGCCTTTGGAACCTCTGGGTACCAGTTGATAGTGCTGCCATGGTTAAGAAGTTTTCTGATGAAAGAAAATTCGATATTCATATCAAGGATAGGCATGAGAGCTTGTTGCTTGGGGCTGGTCTTTCCAATCTTGAATATTCATATCTTTGTGAAATCATGGGTCGCTCAGCTTGGGCTCCTCAAATTTTCAATTGCAGTGCACCAGACACAGGAAATATGGAGGTATTGTTTCGTTATGGCACTGTGGAACAACAAAGGACATGGCTCATTCCTCTATTGGAGGGGAAAATTAGATCTGGATTTGCAATGACAGAGCCTCAAGTTGCATCCTCCGATGCCACTAACATAGAATGCTCAATTTTACGTGAAGGAGATCATTATATCATTAATGGTCGGAAATGGTGGACAAGTGGAGCAATGGATCCAAGATGCAAGATTCTGATAGTTATGGGAAAAACAGATATGAATGCACCTAAGCATAAACAGCAATCAATGGTTCTGGTTCCTATTGATACTCCTGGTGTCCACATAGAAAGAGCCTTGACTGTTTTTGGTTTTGATGATGCTCCTCATGGCCATGCAGAGATTGTCTTTGAGAATGTGCAGGTTCCTATCAAAAATGTCATTCTGGGAGAAGGCCGTGGTTTTGAGATTGCACAAGGACGGTTGGGTCCAGGTCGATTACATCATTGTATGAGATTAGTTGGTGCTGCCGAACGTGGCATTGAAATGATGGTAAAAAGAGCACTCCAAAGAAAAGCCTTTGGCAAGTTGATCGCACAGCATGGATCATTCTTATCTGATCTTGCCAAGTGTCGTTTAGAAATAGAGAAAACAAGATTTTTGGTACTGGAAGCTGCAAATCAATTGGACTTGTTTGGCAATAAAGTTGCCAGAGGAGCAATTGCCATGGCTAAGGTTGCAGCTCCAAACATGGCTTTGAAAGTACTTGATACAGCAATCCAAGTTCATGGTGCCGCAGGTGTAAGCACAGACTTCGTACTTTCCCACCTCTGGGCTTCTGCTCGAACTTTGCGATTAGCAGATGGCCCTGATGAGGTCCATCTTGGGACTATAGCAAAACTTGAATTGTCTAGAGCAAGGCTCTGA___GATCAAGTTAGTATGTTTTATCTAGAAAATCCATCAAAAGCATTCATCTCAACTAGATAACATTCTCAGAAAAAAGCAAAATTTGGGGAAGGATACTTACAGGAGGACATGAAGAATGTTAAATTCTATATTTTGGTATGTTCCAACTTGTAAGTTTATTTGAGAACTACCATAGGGTGAAGCAGGGTATAAAGTTTCCATGATCCAAAGGGAACTATAATTTGTAAATGAGAAAAAGCTATCTTTCGAAGTCACCAGCTGATTAACACCTTTGCTATTCAATTTAAATATTTAGTTGAATAAACTGATTCAAATGATTCTTTTTGGGAGACACTTAACAGTTTGTATAATTATGAATCTGATTGAAAATTACTTATTTATAGATGTAGTTTCATTCCTATATTGGATCAATCATGTTTTACATATTTTTCTCTGGAGCAGTGCGGGAATCAT

Fln Alignment:

Contig11680___WWTSGAMDPRCKILIVMGKTDMNAPKHKQQSMVLVPIDTPGVHIERALTVFGFDDAPHGHAEIVFENVQVPIKNVILGEGRGFEIAQGRLGPGRLHHCMRLVGAAERGIEMMVKRALQRKAFGKLIAQHGSFLSDLAKCRLEIEKTRFLVLEAANQLD--LFGNKVARGAIAMAKVAAPNMALKVLDTAIQVHGAAGVSTDFVLSHLWASARTLRLADGPDEV
B8LPF0_______________WCTNG---PVAETLIIYAKTDPNAGS-KGITTFIIEKGMEGFSTAQKLDKLGMRGSDT--CELVFENCFVPEENILGKEGKGVYVLMSGLDLERLVLSAGPIGLMQASMDVVLPYVRQREQFGRPIGEFQLIQGKLADMYTALQSSRAFVYSVAKKCDNGEVDKKDCAGVILFAAENATQVALQ----AIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2154	33		66		1.0
2192		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain