SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11658

Length: 1758 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11658

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9T173_RICCO	-	-	0.0	49%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	39%
Sma3	Receptor protein kinase CLAVATA1, putative	-	-	9.828e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	6.63e-11	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	4.18e-09	-

Source	Gene names
Sma3	AT1G75820; AT3G49670; AT4G20270; AT4G28650; AT4g20270; AT5G61480; AT5G65700; At1g75820; At3g49670; At4g20270; At4g28650; At5g61480; At5g65700; CLAVATA-1; CLAVATA1; CLL1A; CLL1B; CLV1; CLV1A; CLV1B; CM0216.560.nc; F1C12.190; F6H11.170; FON1; GSVIVT00010645

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65700.1	BAM1 Leucine-rich receptor-like protein kinase family protein chr5:26281826-26284945 FORWARD LENGTH=1003	54%
RefSeq	Arabidopsis thaliana	NP_001190624.1	leucine-rich receptor-like protein kinase BAM1 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002328778.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 439 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 562 - 998

Fln protein: MRSVFRISSLLVISVLVLLTLSSAINDDAEILLAFKSAMSDPDGALAGWTESDAANFCGWTGVLCNEFNRTSSLDLTNMNLSGIIPPQTLSSLDSLVNLSLALNKFSTPFPPEILDISTLRFLNISNNNFSGEIPANISRLVNLELLDTYNNNFSAPLPLEVASLARLRYLHLGGNYFYGSIPACYGNLTSLHYLGLNGNGLTGNLPPELGKLAELRYLFIGHFNNYSCEIPPQFGNLKKLIRLDMSNCGLTGSIPAELGNLSSLDSLFLFLNVLSGPIPPQLGNLRNLKSLDLSFNELTGQIPEEFKNLVSLTLLNLFHNRLHGGIPDSIGDLPELEVLNPWSNNVTGPIPRRLGRNGKLLTLDVSSDKLTGLIPPDLCMGGKLQSLILLGNLFFGPIPATLGSCKSLTRLRLGDNYLNGSIPVGLLNLPQLSLIELQDNYLTGPLMPEGIEVSPGLMQLTVSNNMLSGPLPRTIGKFAGLTEILLNGNEFSGPIPAEINELRQLSKLDFSNNRFSGQIPDGISQCKLLSYIDLSRNNLSGPIPSTITNLGILNYLNISRN

Protein Length: 563

Fln nts: CTCCACTCTACCTTGAAAGCCCACGGCACTCGTGCTGCTGCTGCTCGGCACTCTCAAACGAAGCTACGAACC_-_ATGAGGTCTGTGTTTCGAATCTCGTCCCTTCTCGTGATTTCTGTTCTGGTTCTGCTCACGCTTTCTTCCGCCATTAACGACGATGCCGAGATTCTGCTCGCGTTCAAGTCCGCCATGTCGGATCCCGACGGCGCCCTGGCCGGGTGGACTGAGTCCGACGCCGCCAATTTCTGCGGGTGGACTGGAGTCCTGTGCAACGAATTCAACAGAACGAGTTCTCTGGACTTGACCAACATGAATCTGTCGGGCATCATTCCACCTCAGACATTATCGAGCCTTGACAGTCTCGTGAATCTCAGCTTGGCGCTCAACAAATTCAGCACGCCGTTCCCACCGGAGATCCTGGACATTTCCACTCTGCGATTCCTCAATATATCCAACAATAACTTCAGCGGCGAGATCCCGGCAAACATTTCTCGTTTAGTGAATCTGGAGTTGCTGGACACCTACAACAACAATTTTTCCGCCCCCCTGCCTCTGGAAGTTGCGTCGCTAGCCAGACTCCGGTACCTCCACCTCGGCGGAAATTATTTCTACGGTTCGATTCCTGCTTGCTACGGCAACCTGACGAGTCTCCACTACCTGGGCCTCAACGGAAATGGCCTCACCGGTAACTTGCCGCCGGAGCTTGGCAAACTCGCCGAGCTGCGATACCTCTTCATTGGCCACTTCAACAATTATTCCTGCGAGATCCCGCCTCAGTTTGGGAACTTAAAGAAGCTCATCCGACTGGACATGTCTAACTGCGGGCTCACGGGTTCGATTCCCGCGGAGCTAGGCAATCTGAGCTCGCTCGACTCGCTCTTCCTCTTCTTGAACGTCCTGTCGGGTCCCATTCCTCCCCAGCTCGGCAATCTGAGAAACCTCAAGTCGTTGGATCTTTCATTCAATGAACTGACTGGACAAATCCCGGAAGAATTCAAGAACCTGGTCTCGCTCACGCTCCTGAACCTGTTCCATAACAGGCTCCATGGCGGAATCCCCGATTCCATCGGCGACCTGCCGGAGCTCGAGGTGCTGAATCCCTGGAGCAACAACGTCACGGGTCCGATTCCCCGCCGCCTCGGAAGAAATGGCAAGCTGCTGACCCTGGATGTCTCGTCTGATAAGCTCACGGGCCTCATACCTCCGGATCTCTGCATGGGTGGGAAGTTGCAGAGCCTCATTCTGCTCGGCAATTTATTCTTCGGTCCCATTCCGGCAACCTTGGGGTCCTGCAAATCTCTCACACGCCTTCGCTTGGGAGACAATTATCTCAACGGTTCGATTCCTGTTGGGCTGCTGAATCTACCTCAGTTGAGCCTCATCGAGCTCCAGGACAATTATCTGACTGGTCCCCTAATGCCGGAGGGTATCGAAGTTTCCCCGGGGCTGATGCAGCTGACTGTCTCCAATAATATGCTCAGCGGACCCCTGCCTCGGACTATAGGTAAGTTCGCTGGTTTAACAGAGATTTTGCTTAATGGAAATGAATTCTCAGGACCTATTCCTGCTGAGATTAATGAACTGAGACAACTGAGCAAGTTGGATTTCAGCAACAATAGATTCTCGGGGCAAATCCCAGATGGGATAAGTCAATGCAAGCTTTTATCATATATAGATTTGAGTAGGAATAATCTGAGTGGCCCAATTCCTTCCACAATCACCAATCTGGGCATCCTTAATTATCTGAATATCTCGCGGAAT

Fln Alignment:

Contig11658___ILLAFKSAMSDPDGALAGWTESDAANFCGWTGVLCNEFNR-TSSLDLTNMNLSGIIPPQTXXXXXXXXXXXXXXNKFSTPFPPEILDISTLRFLNISNNNFSGEIPANISRLVNLELLDTYNNNFSAPLPLEVASLARLRYLHLGGNYFYGSIPACYGNLTSLHYXXXXXXXXXXXXXXXXXKLAELRYLFIGHFNNYSCEIPPQFGNLKKLIRLDMSNCGLTGSIPAEXXXXXXXXXXXXXXXXXXGPIPPQLGNLRNLKSLDLSFNELTGQIPEEFKNLVSLTLLNLFHNRLHGGIPDSIGDLPELEVLNPWSNNVTGPIPRRLGRNGKLLTLDVSSDKLTGLIPPDLCMGGKLQSLILLGNLFFGPIPATLGSCKSLTRLRLGDNYLNGSIPVGLLNLPQLSLIELQDNYLTGPLMPEGIEVSPGLMQLTVSNNMLSGPLPRTIGKFAGLTEILLNGNEFSGPIPAEINELRQLSKLDFSNNRFSGQIPDGISQCKLLSYIDLSRNNLSGPIPSTITNLGILNYLNISRN
Q19AV8_______________ILQELKRGFDDPLEVFRNWNEHDNSP-CNWTGITCDAGEKFVEEVDLSNTNIIGPFP-SVVCRIDGLKKLPLADNYVNGSIPADLRRCRKLGYLDLSQSLIVGGLPDFISELSRLRHLDLSGNNLSGPIPPAFGQLLELQVLNLVFNLLNTTIPPFLGNLPNLLQFNLAYNPFTGTVPPELGNLTKLQNLWLAGCNLVG-EIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAMGELKALKRFDASMNMLNGSIPAGLGSL-NLESLNLYQNDLVGEIPPGLGSFASLTELKLFSNRLTGRLPESLGRYSDLQALDIADNLLSGSLPPDLCKNKKLEILSIFNNVFAGNIPESLGTCTSLNRVRLGGNKFNGSVPSSFWGLPHISLLELKDNNFEGLISPD-IANAKCLSQLVINGNTFTGSLPTEIGELRNLSEIIASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1390	12	87			0.992554
1391	12			87	0.992554
1393		87	12		0.992554
1395		14	85		0.993533
1399	85			14	0.993533
1440		16		83	0.994512
1612	85		14		0.993533
1728	33			66	0.997452
1732			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
33	45	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain