SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11653

Length: 1907 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11653

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal membrane protein 11D [Arabidopsis thaliana] ref\|NP_850441.1\| peroxisomal membrane protein 11D [Arabidopsis thaliana] ref\|NP_001031544.1\| peroxisomal membrane protein 11D [Arabidopsis thaliana] sp\|O80845.2\|PX11D_ARATH RecName: Full=Peroxisomal	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	peroxisomal membrane	GO:0005778	Cellular Component	0.0	-
Sma3	peroxisome fission	GO:0016559	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Malate dehydrogenase, active site	IPR001252	-	0.0	-
Sma3	Peroxisomal biogenesis factor 11	IPR008733	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G45740.1	PEX11D peroxin 11D chr2:18839865-18841102 FORWARD LENGTH=236	69%
RefSeq	Arabidopsis thaliana	NP_566055.1	peroxisomal membrane protein 11D [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002301325.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKE7

Fln msg:

Fln protein: MTTLEASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNELHALLTPAPKTTPLPLILLGKSKNALVGTFLLLDQIVWAGRTGIYKNKERADLIGRISLFCFLGGNVCSTLIETSELCRLSMSIKKLEKELKQIKNTSTVDQANLEEQRRLKLKQSNARLLSLAKASVDIVVAVGLLQLAPKKVTPRITGGFGFITSLISLYQLLPPAAKAKAS*

Protein Length: 244

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCAACTAAATGACAGATTAATTATGCAAAAGAATTTTTCGCAATTATCTATTAGTGGCGGACGCCAAATTCGTTAAAGTGGAATTAATTAAAATCAATGCAGGGAAGGAAAATTGAACAAATTCCATTCAGTACATTGTTCAGGCGGCCTGACACACAAAGGAGCCGAGCTGCCCATTCGAGCACTGCAACTAATCGGAGCTGCTTAGGTGATTGGACCATCCTTTATCGACACCTGCATACTCGCTGTCGGTGGTCTTGCGGGTTTTATTCGTATTACGCGTAACGCGTTACGGGCAATAGAGGTCATATTTTGGTTTGCAACTCTAATCTAGTGTGAGACAACAATC_-_ATGACTACTCTAGAGGCATCCAGAGCAGAACTTGCATTCTTAGTGTTATACTTGAGCAAAGCGGAAACCAGAGACAAGATTTGTAGAGCTATTCAATATGGTTCTAAGTTTCTCAGTAATGGTGAGCCTGGTACGGCACAAAATGTTGACAAGTCAACAAGCTTGGCACGGAAAGTTTTTCGGCTTTTTAAGTATGTTAATGAGTTGCATGCTCTCCTTACTCCAGCTCCAAAGACAACTCCCCTTCCTCTTATACTTCTTGGGAAATCAAAGAATGCTTTAGTGGGAACATTTTTGTTACTGGATCAAATTGTCTGGGCTGGTAGAACTGGTATCTACAAGAACAAAGAGCGAGCAGATTTGATTGGGAGGATATCACTCTTTTGCTTCCTTGGTGGAAATGTCTGTAGTACGTTGATAGAGACATCAGAGCTGTGCCGTCTTTCAATGTCTATCAAAAAATTGGAGAAAGAGCTGAAACAAATAAAGAATACATCCACAGTTGATCAAGCTAATCTGGAGGAGCAGAGGCGCCTCAAGCTTAAACAGTCAAATGCTAGGCTATTAAGTCTGGCAAAAGCATCTGTGGACATTGTAGTTGCAGTTGGACTACTTCAGTTGGCACCTAAGAAGGTCACGCCACGAATTACCGGGGGCTTCGGATTTATCACCTCTCTCATCTCTCTCTATCAGTTGCTTCCTCCTGCAGCAAAGGCAAAGGCCTCCTAA___AAGAAGGCAATGTTTATCTGTTGTCTGGCTTCAGATAAATCCAACTTTCTTCTTTGTTTGATGATTTGTTAACTGGCTACTTATTCTGTTGTTTATGATAAGGTGTGCTTAAACTGGGGCAATTCTGTATCCCAAATTTGTAAAGATTTTTATGTAATAAAAGGTGCACTGGCATGTTTCTGTATTTTTGCTACTGGCTGGGGTCAGACATGCTTGCAAAGACATAGTTACCTTTCGTTTAAGCTGCCCTTTATAGTCTATATAGAGAATTATAGCCGATAATTCAAAATGGTTGGATAAATGCAGCAAATGACATCTTCCCTCGGTATCATTAATCATTATAGGTATTGAGGGAAACTGGGTTTGTGTGGATGAAGCGGAATAAGAAGGTTGAGCACGAGTTCAAGGCAATCGGGCGATTGGTGCAATATGATACAGAGATCAGTGGGTATGTTGAGCAACACAAGATGAAGAAGGTGAGTGGAGTGAAGAGCAAGGAGCTTCTTGTGTGGATCACCATCTCTGAGATCTCCATTGATGACCCAGCAAGTGCCTAGATTTGCTTCAGGAGCGCTATCGCTGGGATTGAGAAATCCTTCCCCGTGGGTGCCTTTCAAATTGAAGAGAATGAGAACAAATAAAAGATGGTTTCTTTTAATAAATAAACACTGCTCTTAAATAATTATGTAGCATAGGGTGTAGACTGGACTAGCACGTTTAATTTAAAAGATTTGAATAGCCAGCGAATGTTTAATAATTTTGAGATCTACTCATGATAATTGCTTATGATATCATATTATC

Fln Alignment:

Contig11653___MTTLEASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNEXXXXXXXXXXXXXXXXXXXGKSKNALVGTFLLLDQIVWAGRTGIYKNKERADLIGRISLFCFLGGNVCSTLIETSELCRLSMSXXXXXXXXXXXXNTSTVDQANLEEQRRLKLKQSNARLLSLAKASVDIVVAVGLLQLAPKKVTPRITGGFGFITSLISLYQLLP
A9NKE7_______________MTTLDASRAELAFLVLYLSKAETRDKICRAIQYGSKFLSNGEPGTAQNVDKSTSLARKVFRLFKYVNELHALLTPPPKTTPLPLILLGKSKNALLGTFLALDQIVWAGRTGIYKNKERADLIGRISLFCFLGANICSTLIETSELGRLSISIKKLEKELKKIKNTSTVDQAKLEEQHRLKLKQSNDRLLGLAKASVDIVVAIGLLQLAPKKVTPRVTGGLGFITSLISLYQLLP

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
174		66	33		0.997452
206			16	83	0.994512
207	16		16	66	0.988813
208	16	66	16		0.988813
210	66	33			1.0
211			66	33	1.0
214	66			33	1.0
218		66		33	1.0
219	66		33		1.0
220	66			33	1.0
221		66	33		1.0
223	66			33	1.0
224	66			33	1.0
227			33	66	1.0
233	16		83		0.994512
234	16	83			0.994512
277			20	80	0.995493
342	85			14	0.993533
464	90		10		0.90298
1286		88		11	0.923564
1345	87			12	0.992554
1376	14			85	0.993533
1532		20		80	0.995493
1536	75	25			0.996473
1567		33	66		0.997452
1601		66		33	0.997452
1611	66		33		0.997452
1655	33			66	0.997452
1656		33	66		0.997452
1659			66	33	0.997452
1840	25	75			0.996473
1863		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain