SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11652

Length: 1786 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11652

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana] gb\|AAM13295.1\| peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana]	-	-	53%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	43H1; 46C02.10; AT4g33060; At1g01940; At2g15790; At2g16600; At2g21130; At2g36130; At3g44600; At3g44600/F14L2_150; At3g56070; At4g33060; At4g34870; At4g38740; At5g67530; B1097D05.29; B1331F11.9; CHLREDRAFT_112209; CHLREDRAFT_132902; CHLREDRAFT_196565; CHLR

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	histone binding	GO:0042393	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	regulation of flower development	GO:0009909	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	vegetative phase change	GO:0010050	Biological Process	-
Sma3	regulation of root meristem growth	GO:0010082	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	leaf formation	GO:0010338	Biological Process	-
Sma3	leaf shaping	GO:0010358	Biological Process	-
Sma3	floral meristem determinacy	GO:0010582	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	regulation of histone methylation	GO:0031060	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	carpel development	GO:0048440	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	sepal formation	GO:0048453	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67530.1	ATPUB49, PUB49 plant U-box 49 chr5:26941260-26943878 FORWARD LENGTH=595	61%
RefSeq	Arabidopsis thaliana	NP_201554.1	Peptidyl-prolyl cis-trans isomerase-like 2 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002307316.1	predicted protein, partial [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNI6

Fln msg: your sequence is longer than subject: 379 - 163

Fln protein: MCGGGGKAQNEMAAALAAIHATKSAKTKKSESGTRDKSSGTQALSIVDAASASVYGRSAAAAKAASQEKTAARVAAHIAGECVPVNAKMVKSRFTSGAASRSFTSTSYDPVTKNDFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDEFNSKLLHSERGIVSMANSGPHTNGSQFFILYKSAKHLNFKHTVFGRVVGALSTLSAMDKVPVDDDDRPLEEIKINRVTIFVNPYNEPDEGEEKNTEKKEEELADVESERVGSWYSNPNLGGAPSATGTGVGKYLKARTAEQPVENSPSEEQKDGNGFSKRRKLTSSGTEFKDFSAW*

Protein Length: 380

Fln nts: AATGTAATCAAAGAACTAAATTTGAAGCCAATGAACTGGAAGGAACTGCTCACAGATGAACCATTTACTAAAGATGACTTGATAACGATTCAGTGTCCAAATGCTCTTGATGTAAAGGTCCTTTCAGATTTTGATCATGTGAAAAAGACTTGAAGATTGATGATGAAGAGTTGATAAAACTGAAAGAGGATCCATCATATCATATGAATCTGTCTGGAGACATTAAGCGCATGCTAAAGGAGATTGGTACAGAAAAAGCAAAGGAAATTGCATTAA_-_ATGTGTGGAGGTGGTGGCAAAGCTCAAAATGAAATGGCAGCTGCTCTTGCTGCCATTCATGCTACAAAATCAGCTAAAACAAAGAAATCAGAATCAGGCACTAGAGACAAATCCAGTGGAACTCAAGCTTTAAGTATTGTAGATGCTGCATCTGCTTCAGTGTATGGGAGAAGTGCTGCAGCTGCTAAAGCAGCATCACAAGAGAAGACTGCTGCACGTGTGGCTGCTCACATTGCAGGTGAATGTGTACCTGTCAATGCAAAAATGGTAAAAAGCCGATTTACATCTGGGGCAGCATCACGATCATTTACTTCAACATCTTATGATCCAGTTACGAAGAACGACTTTGAGTACGTCAAAGTTGAAAAAAATCCGAAGAAAAAGGGTTATGTTCAACTTCATACCACACATGGAGATCTTAATATAGAGTTGCACTGTGATATAACTCCTCGCACATGTGAAAATTTCATCACGCTTTGTGAACGTGGGTACTACAATGGAGTGGCTTTCCACAGGAATATTAGAAATTTCATGATCCAAGGTGGTGATCCAACTGGCACTGGAAGAGGAGGAGAATCAATTTGGGGCAAACCTTTTAAAGACGAATTTAATTCCAAATTGCTTCATTCTGAGAGGGGCATTGTCAGTATGGCGAACAGCGGGCCTCATACTAATGGATCACAATTTTTCATTCTTTACAAATCTGCAAAGCATCTGAATTTTAAGCATACAGTATTTGGTCGAGTAGTGGGTGCATTGAGTACTCTTTCAGCAATGGATAAGGTTCCTGTGGATGATGATGATCGGCCTCTGGAAGAAATTAAAATCAACAGAGTAACCATTTTTGTTAATCCTTACAATGAGCCAGATGAGGGAGAAGAAAAGAACACAGAGAAGAAAGAGGAGGAACTTGCTGATGTTGAAAGTGAAAGAGTTGGATCTTGGTATAGCAATCCAAATTTGGGAGGTGCACCTTCTGCTACTGGTACTGGAGTTGGAAAGTATTTAAAGGCAAGAACAGCTGAGCAGCCTGTGGAAAATTCTCCTTCAGAAGAACAGAAGGATGGAAATGGTTTTAGCAAGAGAAGGAAACTGACGAGCTCCGGAACAGAGTTCAAGGATTTTTCAGCATGGTAA___CCAGTAAGCTTGCTAGGAGCAAATTATTTAAGGCACGGAGAAGTCAATGTAGCTGGGATGTAACAATAATGATGTAATCTTTTCACAATGGAGGCTATTGTATGTCTATCAATGATTGGCTGCAAGAATAATAAGTTTCATGTGTGTTTTTATATCAATATTGCTCCAAAATTTGTTCCTAAGCAGCTTTTAAAATTAAGTTAATCCATTTATATTCATAATACAAGTCTGAAGAGTGGACATTGTATATTAAATTGCATTTAAATAGCTTCTGTTACATCGTATCTGTTTTATCAACGGCTATGATTTTATCAGCATATTGAGCTGTTCTTCAGAGTAGTAGATATAAAAAGCTCCTAATGTTGTTTCGTAG

Fln Alignment:

Contig11652___VQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRNIRNFMIQXXXXXXXXXXXESIWGKPFKDEFNSKLLHSERGIVSMANSGPHTNGSQFFILYKSAKHLNFKHTVFGRVVGALSTLSAMDKVPVDDDDRPLEEIKINRVTI
A9NNI6_______________VTLETSMGPVAVELYHKHAPKTCRNFLELSRRGYYNNVKFHRVIKDFMVQGGDPTGTGRGGESIYGPRFEDEITRDLKHTGAGILSMANAGPNTNGSQFFISLAPTPWLDEKHTIFGRVCKGMDVVKRLGNVQTDKNDRPIHDVKILRTTV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
882		83		16	0.994512
906		16		83	0.994512
960	83		16		0.994512
1563			6	81	0.999943

SSRs (tot: 1)

Start position	End position	Sequence	Length
1069	1080	GAT GAT GAT GAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain