SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11630

Length: 1692 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11630

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHV5_RICCO	-	-	0.0	83%
FL-Next	tr=R2R3-MYB transcription factor MYB1; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	64%
Sma3	MYB transcription factor	-	-	1.775e-29	-

Source	Gene names
Sma3	23.t00069; AT4g13480; AT4g26930; At1g08810; At1g08810/F22O13_32; At2g26960; At2g31180; At3g01140; At3g01530; At3g01530/F4P13_8; At3g02940; At3g11440; At3g24310; At3g47600; At3g61250; At4g05100; At4g13480; At4g21440; At4g26930; At4g28110; At5g06100; At5g10

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	gibberellic acid mediated signaling pathway	GO:0009740	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	pollen sperm cell differentiation	GO:0048235	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Transcription factor, GAMYB	IPR016310	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32460.1	MYB101, ATMYB101, ATM1 myb domain protein 101 chr2:13782419-13784363 REVERSE LENGTH=490	72%
RefSeq	Arabidopsis thaliana	NP_180805.1	myb domain protein 101 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002297703.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A5JYE5

Fln msg: your sequence is longer than subject: 493 - 332

Fln protein: MKEEWGEMKKGRGIEDGTSLFSGEGALKKGPWTAAEDAILVAYVKENGEGNWNSVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTPEEERKIIDLHAKLGNKWARMAALMPGRTDNEIKNYWNTRIKRRMRAGLSLYPPEVGAQGPGLDSIMGAHSLHKPEEHGVFMGFGRGCCLPGLSEMNLENINSGGSTDACFDQEDDGGLSSMLKRTSAVSRAGSLDRLSDEGSISIDMQGFLLESNPNSMVSFSSNNNNNSNSFYSVFGASGLKLELPSSQSVGSAGSADTPKSNLSFTNFSSSSSSFQQTNCLISEADSFNDNNSGLLEALLIQEAQCRNNNNNNKDLDSEGHPVEKEANPNLQIIDLQNNSPEHGEAQVQADIQGADEEILSLLDFAKPDPLILPEWYSSSPLSSGIYNPNGGSVVPLGSAFDSQDCEVVVVNLDDSTCNVINDNQYAWDLMGSCVWNSMPGAYQLSDLQANFEHSHNTMNGGC*

Protein Length: 494

Fln nts: CGTGTAGTGCTGTGGACAAGGTATCTGCAGGCAGGCGATGGGTGGTATTGAAGAATTAGAAGAATGTGAAGAAGCAGAAAAAGACGCAGCGGAGATTATTTATTGTTTTTGGGGATTGTGACTGAATTTATAATA_-_ATGAAAGAAGAGTGGGGAGAAATGAAGAAGGGGCGGGGAATCGAAGACGGGACGTCGTTGTTTTCAGGCGAAGGAGCGCTGAAAAAAGGGCCGTGGACAGCAGCTGAGGATGCTATTCTGGTGGCTTATGTGAAGGAAAACGGCGAGGGGAATTGGAATTCTGTGCAGAAGCACTCGGGATTGTCACGCTGTGGGAAAAGCTGCCGGCTCCGGTGGGCAAATCACCTGAGGCCCAATCTCAAGAAAGGCGCTTTTACGCCAGAAGAAGAGCGTAAGATCATCGATTTGCACGCTAAGCTCGGCAACAAATGGGCTCGCATGGCCGCTCTCATGCCCGGACGGACAGACAATGAAATAAAGAATTACTGGAACACGAGAATCAAGAGGCGGATGCGCGCCGGGCTTTCGCTTTATCCACCCGAAGTGGGCGCCCAGGGGCCGGGTTTGGATTCGATCATGGGCGCGCATTCTTTGCATAAACCGGAGGAGCATGGTGTTTTCATGGGCTTCGGCAGGGGTTGTTGCCTTCCGGGGCTAAGCGAAATGAATCTTGAAAATATAAATTCAGGAGGTTCCACTGATGCTTGTTTTGATCAGGAGGATGATGGCGGATTAAGTTCAATGCTAAAGAGAACTAGTGCTGTAAGCCGAGCTGGTTCTTTGGATCGGCTCTCAGACGAAGGCAGCATTAGCATTGACATGCAGGGGTTTTTGCTGGAGTCCAATCCAAATTCCATGGTCTCCTTCAGCAGTAATAACAATAATAATAGTAATAGTTTCTATTCTGTATTTGGGGCTTCGGGCCTCAAATTGGAGCTCCCTTCAAGCCAATCAGTGGGGTCTGCTGGAAGCGCAGACACGCCAAAGTCCAATCTATCTTTTACAAATTTTTCCTCGTCTTCTTCTTCTTTTCAGCAAACCAACTGCCTGATTTCAGAGGCGGACAGTTTTAATGACAACAACTCGGGACTTCTGGAAGCACTACTCATACAGGAAGCACAGTGTCGTAATAATAATAATAATAATAAAGATTTGGATTCAGAAGGCCATCCCGTGGAGAAAGAAGCCAACCCCAATCTACAGATCATTGATCTTCAGAATAATTCTCCGGAGCATGGCGAGGCTCAAGTGCAGGCTGATATTCAAGGTGCAGACGAGGAGATTTTGAGTCTGTTAGACTTTGCAAAGCCCGACCCGCTTATACTGCCCGAATGGTACAGCAGTTCCCCTCTCAGTTCTGGAATTTACAATCCTAATGGAGGCTCCGTTGTTCCGTTAGGTTCTGCGTTCGATTCCCAGGACTGCGAAGTGGTTGTAGTAAACTTGGATGATTCTACATGTAATGTTATTAATGATAATCAGTACGCGTGGGATCTTATGGGGTCCTGCGTTTGGAACTCCATGCCGGGGGCATATCAGCTCAGTGACTTGCAAGCTAATTTCGAGCATTCTCACAATACCATGAATGGAGGATGTTAA___TGGCTCCTGCAGTATTTACTATATTGAGTATTTTTGTTATAGTGGGTGCTGGATTCTCAGTTACTAATCACTCCTGGA

Fln Alignment:

Contig11630___LKKGPWTAAEDAILVAYVKENGEGNWNSVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTPEEERKIIDLHAKLGNKWARMAALMPGRTDNEIKNYWNTRIKRRMR
A5JYE5_______________LKKGPWTAEEDRKLVNFITMHGHGCWREVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNYWNTRIKKKLR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
406	80		20		0.995493
464			75	25	0.996473
1018			25	75	0.996473
1020		25		75	0.996473
1021			25	75	0.996473
1022	75			25	0.996473
1023		75	25		0.996473
1025	75	25			0.996473
1026	75	25			0.996473
1029			25	75	0.996473
1030			25	75	0.996473
1031		25		75	0.996473
1032		75		25	0.996473
1033		75	25		0.996473
1036		25	75		0.996473
1093		25		75	0.996473
1415	25		75		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
1033	1045	TCT TCT TCT TCT T	13
1143	1163	TAA TAA TAA TAA TAA TAA TAA	21

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain