SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11616

Length: 1906 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11616 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp\|Q9M8J9.1\|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb\|AAF30312.1\|AC018907_12 unknown protein [Ara	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Speckle-type POZ protein	-	-	8.432e-19	-

Source	Gene names
Sma3	AT2G39760; At2g39760; At3g03740; At3g06190; At5g19000; B1026C12.20; BPM4; F20H23.23; F23N14_80; F28L1.13; GSVIVT00003848001; GSVIVT00017445001; GSVIVT00018417001; GSVIVT00019885001; GSVIVT00023662001; LOC_Os03g57854; LOC_Os10g28760; LOC_Os10g28770; LOC_Os

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	identical protein binding	GO:0042802	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G06190.1	ATBPM2, BPM2 BTB-POZ and MATH domain 2 chr3:1874577-1876575 REVERSE LENGTH=406	69%
RefSeq	Arabidopsis thaliana	NP_566275.1	BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002315535.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ7

Fln msg:

Fln protein: MAVATKRASSRGIMITTAGGAAVAPSSSSLSCPSRPTSAPSTSTSITDTVNGSHHFTINGYTLSKGMGVGKYIASETFVVGGYEWAIYFYPDGKSPEDNSVYVSLFIALASEGTDVRALFELTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSMWGYKRFFRRAALETSDYIKDDCLSIKCTVGVVGSRTEGPKIYTIPVPESNLGQDFGELLDTGKGADVSFEVDGTIFWAHKLVLAARSPVFKAQLFGPMKDQNTVNIKVEDMEAPVFKAMVHFIYRDTLPCFADLIGSTSPVASTLMAQHLLVAADRYGLDRLRLLSEAKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDYLNESCSSVLSELLESFARVEKNSGMVRQRYEDGSDSNGRRVRQRT*

Protein Length: 422

Fln nts: AACTTGGATGTTTGTTTGGGACAAGTAACGTGGGATTTAAAAGCTCTCCCTCCGAAAGGACGAGTAATCAGATACAGACTGCTGTTAACCAAAGATTCACAGGAGATATCCTCGGACATTAAACCCCAAACAAAGAGACAACACAGCAA_-_ATGGCCGTGGCCACCAAGCGAGCGAGTAGCAGGGGGATTATGATAACAACGGCAGGGGGAGCTGCAGTGGCGCCCTCGTCTTCTTCCCTTTCCTGCCCATCTCGCCCAACTTCCGCGCCGTCGACTTCTACGTCAATTACTGACACCGTCAATGGCTCCCATCACTTCACAATTAACGGTTACACCCTCTCCAAGGGAATGGGAGTCGGGAAATACATCGCCAGTGAAACCTTCGTCGTCGGGGGTTACGAATGGGCCATCTACTTCTATCCCGACGGCAAGAGCCCTGAGGATAATTCGGTCTATGTCTCACTCTTCATAGCCCTGGCCAGTGAGGGCACGGATGTTAGAGCCCTGTTCGAATTGACCCTGCTGGATCAGAGCGGAAATGAAAAGCACAAAACCCATACGCACTTCGATCGGATGCTCGAGAGCGGGCCTTATACGTTGAAATACCGAGGGAGCATGTGGGGCTATAAACGATTCTTCAGAAGAGCTGCACTTGAAACTTCAGATTATATCAAAGATGATTGCCTTTCCATAAAATGCACTGTTGGGGTTGTTGGCTCACGTACAGAGGGGCCAAAAATTTACACCATTCCAGTGCCAGAGTCAAATCTTGGTCAGGATTTTGGTGAACTTTTGGATACTGGAAAGGGTGCAGATGTTAGTTTTGAAGTTGATGGGACAATTTTCTGGGCTCACAAATTGGTGCTTGCTGCTCGCTCACCTGTCTTCAAGGCCCAGCTTTTTGGCCCAATGAAGGATCAGAATACGGTTAATATAAAGGTGGAAGATATGGAAGCGCCAGTATTTAAGGCAATGGTCCATTTCATATATCGAGATACCCTTCCTTGTTTTGCTGACCTGATTGGATCAACTTCACCAGTTGCTTCGACCCTGATGGCCCAACATTTGCTTGTTGCAGCAGATCGGTATGGGTTGGATAGACTCAGGTTACTGTCAGAAGCAAAGTTATGTGACGAAATTAGCATAGACACAGTTGCAACTACTTTAGCACTTGCAGAGCAGCATCAGTGTTTCCAGCTTAAATCAGTTTGTCTCAAATTCATTGCATGTCCTGGGCGACTGAAAGCTGTCATGCAATCTGAGGGATTCGATTATTTGAACGAAAGTTGCTCCTCTGTTCTATCTGAGCTTTTGGAAAGCTTTGCGAGAGTCGAGAAAAATTCAGGCATGGTTAGACAACGATATGAAGATGGGAGTGATTCCAATGGGAGAAGGGTTAGGCAGAGAACATAG___TTTTCTAATTCATAGAGGAATTTGTCTCACTAAATATGAGATTGAGTGCCTCGGCCAATGACAAAATATGAAACTTCTTTTTGAACTTCATAATGAGCCTTTGATCACGCTTGATACTTAGATTTGATGCTTTATTAAAAGTTAAATTCATGTTGACTCTGGTTTGGAAGTCCGTTCTCTCTGTGTTTTGGGCCATTGCCCATGTTTGGTCCTAAAGTCATAAAACACTAATTTCATTCTTTTTCATTTTCATAAATGTGTTTATGAGGTTTACTATTCAGTGCAGTCAATGACTGGGGCTACGGTTCTGAACAATTTCATACGTTCTCTGCTTTGCTTCTGCAAATTATGCGCCAATAGTAAAGTACAGTCTTTGTTTTCTTGCACAACATTTGGACAAACTATAATAGTGGCTAGGTGCTCTGGTTGTTTTGACAGACATTTTGTTCTCAGGCTACTCCACATGTCCATGAAATAGAATTACTGGGTTTGCG

Fln Alignment:

Contig11616___VNGSHHFTINGYTLSKGMGVGKYIASETFVVGGYEWAIYFYPDGKSPEDNSVYVSLFIALASEGTDVRALFELTLLDQSGNEKHKTHTHFDRMLESGPYTLKYRGSMWGYKRFFRRAALETSDYIKDDCLSIKCTVGVVGSRTEGPKIYTIPVPESNLGQDFGELLDTGKGADVSFEVDGTIFWAHKLVLAARSPVFKAQLFGPMKDQNTVNIKVEDMEAPVFKAMVHFIYRDTL----PCFADLIGSTSPVASTLMAQHLLVAADRYGLDRLRLLSEAKLCDEISIDTVATTLALAEQHQCFQLKSVCLKFIACPGRLKAVMQSEGFDYLNXXXXXXXXXXXXSFARVE---KNSGMVRQ---RYEDGSDSNGRRVRQRT
A9NUQ7_______________VNGSHNFVIQGYSLAKGMGVGRHIASETFTVGGYQWAIYFYPDGKNAEDNSLYVSVFIALASEGTDVRALFELTLVDQSGKGKNKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRAVLETSDYLKDDCLKLNCTVGVVVSATESPMLHSISVPESDLGLHFGALLENQEASDVTFDVAGEKFHAHKLVLAARSPVFKAKFFDSSEQSN--EVVITDMEPTVFKAMLHYIYRDTLPDEEPSSPNSSSSSSSSTTETLTERLLAVAQLYGLRRLRLLCESKLCRSISVNTVASTLALAESHHATDLKATCLKFAA--ENLAGVMRSKGFEYLKEKCPLLQSELLKTVAHFEDDCSSGGKTRSVWAQLSDGTDINGRRVRPRT

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
325		66		33	0.997452
429	14			71	0.984337
1289	90		10		0.90298
1293			90	10	0.90298
1294	10	90			0.90298
1297		90		10	0.90298
1298		90	10		0.90298
1299	10			90	0.90298
1300	10	90			0.90298
1303	10			90	0.90298
1305			10	90	0.90298
1498	85		14		0.993533
1844		14		85	0.999981
1846	14		85		0.999981
1858			90	10	0.90298
1881	75	25			1.0
1883		25		75	1.0
1884		12		87	0.992554
1885	28		57		1.0
1886		14		85	0.993533
1887		83		16	0.994512
1891	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain