SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11614

Length: 2395 nt

UniGene Fasta

>sp_v3.0_unigene11614
AATTTCACCGGCTTAATCATGGAATAAAATTGGGGTGGAGAGCAAGACTGGGACGAAAAGGGCAGGCGATGAGGTCAAAATTATTTGGTAGAAAGATTGAATCAAATGAAGTTGCTGATTCTCCAACTCATTCCTCTGGGAATTCGAGCACTGTTAGTCCAGATCGAGGGCAAAGCAGCTCAAGGGACTGCACAAGCAGTGAGACAGTTACACATGATCATCCAGAAGCCTTGAATGTGGGTCTGAAAAAGGAGGCAATAGACAAAGATAATCATGTTGAAACATGTCAAATCTCAGAGCATAGCAAGTGGGTGTTTGGGAGGGTGCTGGACCCAAGAAGCAAAGCTGTACAGGAATGGAATCTCCTGTTTCTTTTTGTTTGTGGAATTGGATTAGCAATCGACCCATTATTCTTCTATACCCTTTCGGTCAGTGACAATTTAATGTGTTTATATGTTGATGGATGGTTTGCAGTAACAGTCACAGTTCTGCGATCCATGGGGGACGCTATGCATTTATGGAATATATGGTTGCAGGCGAAGTTAGCATATGTTTCAAAACAGTCTCTAGTGGTCGGTTCTGGAAATCTTGTGACCGATCCTCGGTCAATTGCGTTGCATTATTTGAGGTCTAGAAAAGGGTTTTTGTTCGATGTTTTTGTTATTCTCCCTTTGCCTCAGATGGTCCTCTGGGTTGCAGCCCCTGCACTTATCATGGAAGGAAAGATAATCACAGTCATGACTGTTTTCCTGATTATGTTTTTATTTCAGTATTTACCCAAGGTCTATCATTCAATTTGTATATTACGCCGAGTGCAGCATGTGTCTGGTTATATTTTTGGTACAATCTGGTGGGGATTTTCCTTGAATATACTTGCCTACTTCGTCGCTGCTCATGCTGCTGGCGCTTGTTGGTACTTGCTTGGGATTCAGCGGTCTGCAAAATGTCTGCAAGACCAATGTGAAGCTATTGGAAGTTGTGATTTCCATATACTGGGCTGCAACAAGCCCATATATTATGGGTCACCGATGATGAAAGACATAGGAAGAGCAGCGTGGACCATGAATGACACTGTGCATTCGATCTGCGTAAACAACAACGGTATTTTCAACTATGGAGCTTATAAATGGGTTGTGCCTTTGGTTACTAACACAAATCGCATTGAGAAAGTATTATTCCCGATCTTTTGGGGTCTAATGACACTAAGCACATTTGGTAATTTGGAGAGTACCACGGAATGGCTAGAGGTTATCTTCAACATTATAATGTTGACCAGTGGATTGCTTCTAGTCACGATGCTTATTGGAAACATCAAGGTTTTTCTGCATGCGGCAATATCAAAGAAGCAGTCCATGCAGCTGAGAATGAGGAACATGGAATGGTGGATGCGGCGGCGCCAGTTGCCTCATCAATTAAGGCAAAGAGTTCGACACTACGAACGACAGAAGTGGGCTGCAATGCGCGGAGTCGATGAAGGTGGAATGATCAATGACTTGCCCGAAGGCCTTCGACGGGATGTTAAATATCATCTCTGTTTAGACCTCGTGCGCCAGGTTCCTTTGTTTCAACACATGGAAGATCTCGTTCTCGAGAATATCTGTGATCGTGTTAAATCAGTCATATTCACCAAAGGCGAAACGATAATGAATGAGGGAGATCCGGTCCAACGAATGTTATTTATAGTGAGGGGACACATTAAAAGCACGCACCAGTTGAGGAAGGAAGTGAGGAGCACATGTATGCTGGGGCCGGGAAATTTCTGTGGGGATGAATTGCTGTCATGGTGTGTTCGGAGGCCATTTGTGGAGCGGCTGCCCACTTCGTCTTCGACGTTCGTGAGCATGGAGACAACGGAAGCATTCGCTCTGGAGGCGCAGGAGCTGAAGTACGTGACGCAGCACTTCCGGTACACGTTTCTAAGCGAGAAGCTGAAGGGAACAGCGAGGTATTACTCTCCCGGGTGGAGGACATGGGCGGCCGTCGCCATCCAACTGGCGTGGCGGCGCTACAAAGCGAGGTCGGCTGCCGCTGGCTCCTCTCTCGCTGCCCTCTCCTTTGTTCGGCTGCGGAGACCACTTACCAGAATTTATTCTTCTTCCTGCGAAGAAGATCGCCTCCGACTCTATGCCGCTCTCATCGCCTCCCCCAAACCGAATGATGATGATTTCTTCTTGTGATATTGCTTTCTGCTTCATTGGTTCATCATCCATGCTCTCTTAGGTATTTAGATTGAGAGTTTTATAACCACATATCAAGTGTAGTGTACTCACATATGTATTTATTTGTAATTTAAGTTAAGAATGTGTGTTTCTTTGTAATTTAATTTAAGAATATGTATTGGTTTATTCCATTATAGATATGAATAAATATGAGATGATAATGATTAACCGCTATT

Ace file of the UniGene sp_v3.0_unigene11614

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclic nucleotide-gated ion channel, putative n=1 Tax=Ricinus communis RepID=B9SIE1_RICCO	-	-	0.0	65%
FL-Next	sp=Cyclic nucleotide-gated ion channel 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Cyclic nucleotide-gated ion channel, putative	-	-	8.887e-20	-

Source	Gene names
Sma3	AT5G54250; At5g15410; At5g54250; B1100D10.29; CNGC-A; CNGC2; CNGC4; DND1; GSVIVT00021034001; GSVIVT00024557001; GSVIVT00027587001; HLM1; LOC_Os03g55100; Nec1; OJ1046_F07.6; OSJNBa0017K09.10; OSJNBa0040E01.13; OSJNBa0054K20.32; Os01g0782700; Os01g0782800;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ion channel activity	GO:0005216	Molecular Function	-
Sma3	intracellular cAMP activated cation channel activity	GO:0005222	Molecular Function	-
Sma3	inward rectifier potassium channel activity	GO:0005242	Molecular Function	-
Sma3	voltage-gated potassium channel activity	GO:0005249	Molecular Function	-
Sma3	calcium channel activity	GO:0005262	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	cation transmembrane transporter activity	GO:0008324	Molecular Function	-
Sma3	cAMP binding	GO:0030552	Molecular Function	-
Sma3	cGMP binding	GO:0030553	Molecular Function	-
Sma3	ion transport	GO:0006811	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	nitric oxide mediated signal transduction	GO:0007263	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	Ribonuclease H1, N-terminal	IPR011320	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54250.1	ATCNGC4, CNGC4, HLM1, DND2 cyclic nucleotide-gated cation channel 4 chr5:22025684-22029971 REVERSE LENGTH=694	62%
RefSeq	Arabidopsis thaliana	NP_851188.1	cyclic nucleotide-gated ion channel 4 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002330420.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q94AS9

Fln msg:

Fln protein: MRSKLFGRKIESNEVADSPTHSSGNSSTVSPDRGQSSSRDCTSSETVTHDHPEALNVGLKKEAIDKDNHVETCQISEHSKWVFGRVLDPRSKAVQEWNLLFLFVCGIGLAIDPLFFYTLSVSDNLMCLYVDGWFAVTVTVLRSMGDAMHLWNIWLQAKLAYVSKQSLVVGSGNLVTDPRSIALHYLRSRKGFLFDVFVILPLPQMVLWVAAPALIMEGKIITVMTVFLIMFLFQYLPKVYHSICILRRVQHVSGYIFGTIWWGFSLNILAYFVAAHAAGACWYLLGIQRSAKCLQDQCEAIGSCDFHILGCNKPIYYGSPMMKDIGRAAWTMNDTVHSICVNNNGIFNYGAYKWVVPLVTNTNRIEKVLFPIFWGLMTLSTFGNLESTTEWLEVIFNIIMLTSGLLLVTMLIGNIKVFLHAAISKKQSMQLRMRNMEWWMRRRQLPHQLRQRVRHYERQKWAAMRGVDEGGMINDLPEGLRRDVKYHLCLDLVRQVPLFQHMEDLVLENICDRVKSVIFTKGETIMNEGDPVQRMLFIVRGHIKSTHQLRKEVRSTCMLGPGNFCGDELLSWCVRRPFVERLPTSSSTFVSMETTEAFALEAQELKYVTQHFRYTFLSEKLKGTARYYSPGWRTWAAVAIQLAWRRYKARSAAAGSSLAALSFVRLRRPLTRIYSSSCEEDRLRLYAALIASPKPNDDDFFL*

Protein Length: 704

Fln nts: AATTTCACCGGCTTAATCATGGAATAAAATTGGGGTGGAGAGCAAGACTGGGACGAAAAGGGCAGGCG_-_ATGAGGTCAAAATTATTTGGTAGAAAGATTGAATCAAATGAAGTTGCTGATTCTCCAACTCATTCCTCTGGGAATTCGAGCACTGTTAGTCCAGATCGAGGGCAAAGCAGCTCAAGGGACTGCACAAGCAGTGAGACAGTTACACATGATCATCCAGAAGCCTTGAATGTGGGTCTGAAAAAGGAGGCAATAGACAAAGATAATCATGTTGAAACATGTCAAATCTCAGAGCATAGCAAGTGGGTGTTTGGGAGGGTGCTGGACCCAAGAAGCAAAGCTGTACAGGAATGGAATCTCCTGTTTCTTTTTGTTTGTGGAATTGGATTAGCAATCGACCCATTATTCTTCTATACCCTTTCGGTCAGTGACAATTTAATGTGTTTATATGTTGATGGATGGTTTGCAGTAACAGTCACAGTTCTGCGATCCATGGGGGACGCTATGCATTTATGGAATATATGGTTGCAGGCGAAGTTAGCATATGTTTCAAAACAGTCTCTAGTGGTCGGTTCTGGAAATCTTGTGACCGATCCTCGGTCAATTGCGTTGCATTATTTGAGGTCTAGAAAAGGGTTTTTGTTCGATGTTTTTGTTATTCTCCCTTTGCCTCAGATGGTCCTCTGGGTTGCAGCCCCTGCACTTATCATGGAAGGAAAGATAATCACAGTCATGACTGTTTTCCTGATTATGTTTTTATTTCAGTATTTACCCAAGGTCTATCATTCAATTTGTATATTACGCCGAGTGCAGCATGTGTCTGGTTATATTTTTGGTACAATCTGGTGGGGATTTTCCTTGAATATACTTGCCTACTTCGTCGCTGCTCATGCTGCTGGCGCTTGTTGGTACTTGCTTGGGATTCAGCGGTCTGCAAAATGTCTGCAAGACCAATGTGAAGCTATTGGAAGTTGTGATTTCCATATACTGGGCTGCAACAAGCCCATATATTATGGGTCACCGATGATGAAAGACATAGGAAGAGCAGCGTGGACCATGAATGACACTGTGCATTCGATCTGCGTAAACAACAACGGTATTTTCAACTATGGAGCTTATAAATGGGTTGTGCCTTTGGTTACTAACACAAATCGCATTGAGAAAGTATTATTCCCGATCTTTTGGGGTCTAATGACACTAAGCACATTTGGTAATTTGGAGAGTACCACGGAATGGCTAGAGGTTATCTTCAACATTATAATGTTGACCAGTGGATTGCTTCTAGTCACGATGCTTATTGGAAACATCAAGGTTTTTCTGCATGCGGCAATATCAAAGAAGCAGTCCATGCAGCTGAGAATGAGGAACATGGAATGGTGGATGCGGCGGCGCCAGTTGCCTCATCAATTAAGGCAAAGAGTTCGACACTACGAACGACAGAAGTGGGCTGCAATGCGCGGAGTCGATGAAGGTGGAATGATCAATGACTTGCCCGAAGGCCTTCGACGGGATGTTAAATATCATCTCTGTTTAGACCTCGTGCGCCAGGTTCCTTTGTTTCAACACATGGAAGATCTCGTTCTCGAGAATATCTGTGATCGTGTTAAATCAGTCATATTCACCAAAGGCGAAACGATAATGAATGAGGGAGATCCGGTCCAACGAATGTTATTTATAGTGAGGGGACACATTAAAAGCACGCACCAGTTGAGGAAGGAAGTGAGGAGCACATGTATGCTGGGGCCGGGAAATTTCTGTGGGGATGAATTGCTGTCATGGTGTGTTCGGAGGCCATTTGTGGAGCGGCTGCCCACTTCGTCTTCGACGTTCGTGAGCATGGAGACAACGGAAGCATTCGCTCTGGAGGCGCAGGAGCTGAAGTACGTGACGCAGCACTTCCGGTACACGTTTCTAAGCGAGAAGCTGAAGGGAACAGCGAGGTATTACTCTCCCGGGTGGAGGACATGGGCGGCCGTCGCCATCCAACTGGCGTGGCGGCGCTACAAAGCGAGGTCGGCTGCCGCTGGCTCCTCTCTCGCTGCCCTCTCCTTTGTTCGGCTGCGGAGACCACTTACCAGAATTTATTCTTCTTCCTGCGAAGAAGATCGCCTCCGACTCTATGCCGCTCTCATCGCCTCCCCCAAACCGAATGATGATGATTTCTTCTTGTGA___TATTGCTTTCTGCTTCATTGGTTCATCATCCATGCTCTCTTAGGTATTTAGATTGAGAGTTTTATAACCACATATCAAGTGTAGTGTACTCACATATGTATTTATTTGTAATTTAAGTTAAGAATGTGTGTTTCTTTGTAATTTAATTTAAGAATATGTATTGGTTTATTCCATTATAGATATGAATAAATATGAGATGATAATGATTAACCGCTATT

Fln Alignment:

Contig11614___SGNSSTVSPDRGQSSSRDCTSSETVTHDHPEALNVGLKKEAIDKDNHVETCQ-----ISEHSKWVF-GRVLDPRSKAVQEWNLLFLFVCGIGLAIDPLFFYTLSVSDNLMCLYVDGWFAVTVTVLRSMGDAMHLWNIWLQAKLA----YVSKQSLV-VGSGNLVTDPRSIALHYLRSRKGFLFDVFVILPLPQMVLWVAAPALIMEGKIITVMTVFLIMFLFQYLPKVYHSICILRRVQHVSGYIFGTIWWGFSLNILAYFVAAHAAGACWYLLGIQRSAKCLQDQCEAIGSCDFHILGCNKPIYYGSPMMK-DIGRAAWTMNDTVHSICVNNNGIFNYGAYKWVVPLVTNTNRIEKVLFPIFWGLMTLSTFGNLESTTEWLEVIFNIIMLTSGLLLVTMLIGNIKVFLHAAISKKQSMQLXXXXXXXXXXXXXXXXXXXXXXXXYERQKWAAMRGVDEGGMINDLPEGLRRDVKYHLCLDLVRQVPLFQHMEDLVLENICDRVKSVIFTKGETIMNEGDPVQRMLFIVRGHIKSTHQLRKEVRSTCMLGPGNFCGDELLSWCVRRPFVERLPTSSSTFVSMETTEAFALEAQELKYVTQHFRYTFLSEKLKGTARYYSPGWRTWAAVAIQLAWRRYKXXXXXXXXXXXXXXFVRLRRPLTRIYSSSCEEDRLRLYAALIASPKPN
Q94AS9_______________SRDSSSV----GYYSEEDNTEEEDEEEEEMEEIEEEEEEEEEEDPRIGLTCGGRRNGSSNNNKWMMLGRILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCMCLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIARRWPYPGGDSDGDTNKGGGTRGSTRVAPPYVK-KNGFFFDLFVILPLPQVVLWVVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQCENTIGCDLRMLSCKEPVYYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTIQLVSSESRLEKILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAVQLAWRRYK-----HRLTLTSLSFIRPRRPLSR--CASLGEDKLRLYAAILTSPKPN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
673		25		75	0.996473
710		75		25	0.996473
712	25			75	0.996473
732	85	14			0.993533
735			14	85	0.993533
737	85			14	0.993533
750		85		14	0.993533
757		85	14		0.993533
770		14		85	0.993533
780	85		14		0.993533
837		25	75		1.0
840			25	75	1.0
842		25		75	1.0
843	75	25			1.0
846			25	75	1.0
847			25	75	1.0
848		25		75	1.0
849			75	25	1.0
855	75	25			1.0
858	20			80	0.999996
886	20	80			0.999996
887		80		20	0.999996
977		71		28	1.0
1036		60		40	1.0
1052		40		60	1.0
1068	20		80		0.995493
1101	75		25		0.996473
2363		33		66	1.0
2365	33			66	1.0
2367	33		66		1.0
2377	16			83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain