SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11575

Length: 2123 nt

UniGene Fasta

>sp_v3.0_unigene11575
AAGATCGGGCTATCCCACTCGGATGTCTCACCAGCAGTTTGCAAAACGGTATGGGTTCCTCTTGCCAGGAAACAATGTTGGCCAAGATGCACTTAGTGTTTCAGTGGCAATCCTTCACCAATTTAATATCCTGCCTGAGATGTACCAAGTTGGTTTCACAAAGTTGTTTTTCCGAACAGGACAGATTGCCAAACTGGAAGATACTTGTGTTCGAACTCTTCGTGGAATTCTTGGAGTCCAAAAAGTTTTCAGAGGCTATACAGCTCGTTGCCAGTTTAAGAAGCTCAAAAGAGCAATCGTAGTCATGCAATCTTTTATAAGAGGTGCAAAGGCAAGGAGAGAATATCAAGTCTTGATAAAGAGGCACAGAGCGGTAGTTACTATTCAAAAAGAAGTAAGGTGTAGAAAAACTAGAATGCAATACCTGAAGACTCAGAAAATGGTTATTCTTGTTCAGTCAGTGATCCGTGGCTGGCTTGCGAGAAGACAGGCAGGAATGATGCGAAGAAAGTTATATGAAGAAATATCAGATGTCAGAGTTGCTGTAAAGGAGTGTGTCACTGATCTAAGCTTCAACAGAAATGATGAGCTTGACATTGAGGTTAAACAAATAGAAAGGATCAATGGCCTGCCAAGTAAAACATTACCTGTAAAGGAATTAAAGTTCTCTGAGCAGGATTCTGAAACTGAAGGAACAGTCAAGGTTCAAGCATCATACCTTGCAGAGCTTCAAAGGCGCGTCCTTGAAGCAGAGGCAACTTTGAGGGAGAAGGAAGATGATAATCTCCTTTTGCAACAAAGACTGCACCAATATGAATCCAGATGGTCTGAATATGAAGCCAAGATGACCTCCATGGAGGAAATGTGGCAGAAACAGATGGTGTCATTACAACTGAGCCTCGTTGCAGCTAAGAAAAGTCTGGCTGATGAAGCTATGTTTAAGCAAACAAGGCAGGATGATGCAATAAGTAACCAGAGCAATGTTTCACGAAATCGGCCACCTAAACCCATTATGCCACATGATGATGATGAATTTGATTGGGATGACTCTACTTCTGTCGGAACAAAGACACCTGATTATAAGCTTCCTTCTCACCATTCTGATAATGGACTAGCAAGGGAACTTGATGCAGGGATGTCTGTTGTTCGTCACTTGGTTAAGGAGTTTGAGCAAAGAACCCAGGTTTTCAATGATGATACAGATTTCCTGGTTGAAGTCAAATCTGGTCAGGCAGATGCGAATCTTAATCCTGATGAAGAACTTCGGAAGCTGAAGCAGAGATTTGATATTTGGAAAAAGGATTTCAAGGTTAGTTTACGCGAGACAAAGGGTATCCTACAGAAACTTGGGAATGTAGATTCATTAGCTGAAAAATCAAAGAAAAAATGGTGGGGAAAGAGAAGCAGTTAAGAGTACTATCATCTTTAGCAGTACAGTTACTGACTATGTCAAAGAAAGGAGTTGTGCACAGATGTGATCTATAATGCCATTGTAGGTTGGCCGTTTTCTTTGTTATGTATACATATTAAGCACCCTTTGATAGGTGTGCATATTTTTTTCCGCAACGTGCATTTGACTGAGAACTGGTCCAAGTTCTGGGTAAATGGCCTGAATATAATGTTGATTGAAGTAAAGGCTTTGAGGGGGTGTTTAGATGAGCGGAGTATTTTGATGAGCTTTCTCAGAGGTCTTGAAAATAAGACCAAAAGCATGTAGACATAGCAAGATGGTAAATGGGGACCAGTTTTGAAGGCGTAAATCTCTGCCTTTCTGGTGAAACAGTAAATCTGAGGTGTATATTGTATTGATATCTTTTGTAAACCTGAAGGTTGAAGGAGAGATATGTAATCTACAATTCTGTACAACACTACATGTAAAATTGCATCTTGCAGATTGCTGCTATAAGAGATGAGCTTTTTGCTTTAGGCATATGCTTCCGAATTTCGATGACACGTTAAGACAGGTGATTCTATATGCTAAAAGGCATTGTATGCAAATATTTTTTACTCATTTTTGCTGCCTAGATCCCAAGGTTATTGGCATAGTAGTGAAAGCCACGTCAGCTACCTTGAGAATCTCATGCCATATATCTACCCATCCACTTGATTGAGCTGAACTGTAT

Ace file of the UniGene sp_v3.0_unigene11575

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Myosin VIII-1 n=1 Tax=Nicotiana benthamiana RepID=B0CN62_NICBE	-	-	0.0	48%
FL-Next	tr=Myosin VIII; Marchantia polymorpha (Liverwort) (Marchantia aquatica).	-	-	0.0	50%
Sma3	Myosin vIII, putative	-	-	1.49e-08	-

Source	Gene names
Sma3	ATM; At1g50360; At3g19960; F14I3.6; GSVIVT00003146001; GSVIVT00027592001; LOC_Os10g34710; MyoVIIIA1; MyoVIIIA2; OSJNBb0049A16.3; Os07g0562800; Os10g0488800; OsI_26483; OsI_34110; OsJ_24744; OsJ_31968; PHYPADRAFT_116702; PHYPADRAFT_133521; PHYPADRAFT_14313

Source	GOs	Term	Type	Identity
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50360.1	VIIIA, ATVIIIA P-loop containing nucleoside triphosphate hydrolases superfamily protein chr1:18650688-18657106 FORWARD LENGTH=1153	47%
RefSeq	Arabidopsis thaliana	NP_188630.1	myosin 1 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002310637.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: H3JRT8

Fln msg: your sequence is shorter than subject: 470 - 1365

Fln protein: RSGYPTRMSHQQFAKRYGFLLPGNNVGQDALSVSVAILHQFNILPEMYQVGFTKLFFRTGQIAKLEDTCVRTLRGILGVQKVFRGYTARCQFKKLKRAIVVMQSFIRGAKARREYQVLIKRHRAVVTIQKEVRCRKTRMQYLKTQKMVILVQSVIRGWLARRQAGMMRRKLYEEISDVRVAVKECVTDLSFNRNDELDIEVKQIERINGLPSKTLPVKELKFSEQDSETEGTVKVQASYLAELQRRVLEAEATLREKEDDNLLLQQRLHQYESRWSEYEAKMTSMEEMWQKQMVSLQLSLVAAKKSLADEAMFKQTRQDDAISNQSNVSRNRPPKPIMPHDDDEFDWDDSTSVGTKTPDYKLPSHHSDNGLARELDAGMSVVRHLVKEFEQRTQVFNDDTDFLVEVKSGQADANLNPDEELRKLKQRFDIWKKDFKVSLRETKGILQKLGNVDSLAEKSKKKWWGKRSS*

Protein Length: 471

Fln nts: AAGATCGGGCTATCCCACTCGGATGTCTCACCAGCAGTTTGCAAAACGGTATGGGTTCCTCTTGCCAGGAAACAATGTTGGCCAAGATGCACTTAGTGTTTCAGTGGCAATCCTTCACCAATTTAATATCCTGCCTGAGATGTACCAAGTTGGTTTCACAAAGTTGTTTTTCCGAACAGGACAGATTGCCAAACTGGAAGATACTTGTGTTCGAACTCTTCGTGGAATTCTTGGAGTCCAAAAAGTTTTCAGAGGCTATACAGCTCGTTGCCAGTTTAAGAAGCTCAAAAGAGCAATCGTAGTCATGCAATCTTTTATAAGAGGTGCAAAGGCAAGGAGAGAATATCAAGTCTTGATAAAGAGGCACAGAGCGGTAGTTACTATTCAAAAAGAAGTAAGGTGTAGAAAAACTAGAATGCAATACCTGAAGACTCAGAAAATGGTTATTCTTGTTCAGTCAGTGATCCGTGGCTGGCTTGCGAGAAGACAGGCAGGAATGATGCGAAGAAAGTTATATGAAGAAATATCAGATGTCAGAGTTGCTGTAAAGGAGTGTGTCACTGATCTAAGCTTCAACAGAAATGATGAGCTTGACATTGAGGTTAAACAAATAGAAAGGATCAATGGCCTGCCAAGTAAAACATTACCTGTAAAGGAATTAAAGTTCTCTGAGCAGGATTCTGAAACTGAAGGAACAGTCAAGGTTCAAGCATCATACCTTGCAGAGCTTCAAAGGCGCGTCCTTGAAGCAGAGGCAACTTTGAGGGAGAAGGAAGATGATAATCTCCTTTTGCAACAAAGACTGCACCAATATGAATCCAGATGGTCTGAATATGAAGCCAAGATGACCTCCATGGAGGAAATGTGGCAGAAACAGATGGTGTCATTACAACTGAGCCTCGTTGCAGCTAAGAAAAGTCTGGCTGATGAAGCTATGTTTAAGCAAACAAGGCAGGATGATGCAATAAGTAACCAGAGCAATGTTTCACGAAATCGGCCACCTAAACCCATTATGCCACATGATGATGATGAATTTGATTGGGATGACTCTACTTCTGTCGGAACAAAGACACCTGATTATAAGCTTCCTTCTCACCATTCTGATAATGGACTAGCAAGGGAACTTGATGCAGGGATGTCTGTTGTTCGTCACTTGGTTAAGGAGTTTGAGCAAAGAACCCAGGTTTTCAATGATGATACAGATTTCCTGGTTGAAGTCAAATCTGGTCAGGCAGATGCGAATCTTAATCCTGATGAAGAACTTCGGAAGCTGAAGCAGAGATTTGATATTTGGAAAAAGGATTTCAAGGTTAGTTTACGCGAGACAAAGGGTATCCTACAGAAACTTGGGAATGTAGATTCATTAGCTGAAAAATCAAAGAAAAAATGGTGGGGAAAGAGAAGCAGTTAA___GAGTACTATCATCTTTAGCAGTACAGTTACTGACTATGTCAAAGAAAGGAGTTGTGCACAGATGTGATCTATAATGCCATTGTAGGTTGGCCGTTTTCTTTGTTATGTATACATATTAAGCACCCTTTGATAGGTGTGCATATTTTTTTCCGCAACGTGCATTTGACTGAGAACTGGTCCAAGTTCTGGGTAAATGGCCTGAATATAATGTTGATTGAAGTAAAGGCTTTGAGGGGGTGTTTAGATGAGCGGAGTATTTTGATGAGCTTTCTCAGAGGTCTTGAAAATAAGACCAAAAGCATGTAGACATAGCAAGATGGTAAATGGGGACCAGTTTTGAAGGCGTAAATCTCTGCCTTTCTGGTGAAACAGTAAATCTGAGGTGTATATTGTATTGATATCTTTTGTAAACCTGAAGGTTGAAGGAGAGATATGTAATCTACAATTCTGTACAACACTACATGTAAAATTGCATCTTGCAGATTGCTGCTATAAGAGATGAGCTTTTTGCTTTAGGCATATGCTTCCGAATTTCGATGACACGTTAAGACAGGTGATTCTATATGCTAAAAGGCATTGTATGCAAATATTTTTTACTCATTTTTGCTGCCTAGATCCCAAGGTTATTGGCATAGTAGTGAAAGCCACGTCAGCTACCTTGAGAATCTCATGCCATATATCTACCCATCCACTTGATTGAGCTGAACTGTAT

Fln Alignment:

Contig11575___RSGYPTRMSHQQFAKRYGFLLPGN-NVGQDALSVSVAILHQFNILPEMYQVGFTKLFFRTGQIAKLEDTCVRTLRGILGVQKVFRGYTARCQFKKLKRAIVVMQSFIRGAKARREYQVLIKRHRAVVTIQKEVRCRKTRMQYLKTQKMVILVQSVIRGWLARRQAGMMR---------RKLYEEISDVRVAVKECVTDLSFNRNDELDIEVKQI-ERINGLPSKTLPVKELKFSE----------------------QDSETEGTVKVQASYLAELQRRVLEAEATLREKEDDNLLLQQRLHQYESRWSEYEAKMTSMEEMWQKQMVSLQLSLVAAKKSLA-DEAMFKQTRQDDAISNQSNVSRNRPPKPIMPHXXXXXXXXXSTSVGTKTPDY-----KLPSHHS-DNGLAR-ELDAGMSVVRHLVKEFEQRTQVFNDDTDFLVEVKSGQADANLNPDEELRKLKQRFDIWKKDFKVSLRETKGILQKLGNVDSL
H3JRT8_______________RSGYPTRHSFQQFADRYSFLLPKPMSPKENPLSVCVAILKQFGIPQEMYQVGITKLFFRAGQIGQLEDTRLHTLQGVIGVQSLFRGYKVRCWYRLLRHTAIFCQTLVRGAKARREFKILKERHYAAIIIQKHFRRKLATWKYHTTLQMIVVVQSAVRSWLAMKELEKLRLQKAETDRAAKLLAEQKAAAEAAELAAARERESRDFREAQEAKEAQEAAAAAASATAAAKSVAVTTSLVKDKEHVKETSVPAPSDSKVKDVEVDTSIKVQPSVLLELQKRALAAEKSLREKEEDNALLKHRLQQFEARWLEHQAKMESMEEMWQKQMTSLQLSLAAAKKSLANDEPTTVVQREEERLNLRISVSRHRASRHILPQDDDDFDWDDSTTLGTKSPDMSVTPRKYPPHPPLEYPLSRGELDAGRSLVGHLVKEFDQRTQVFNDDADFLVEVKSGQTEANLNPDEELRKLKHRFDVWKKDFKVRLRETKTVLHKLGSMDAV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
546	25		50	25	0.995533
1352	11		88		0.923564
1353	88	11			0.923564
1505	16		83		0.994512
1564	20		80		0.995493
1711	28		71		1.0
1712		85	14		0.993533
1714		14		85	0.993533
1715	14		85		0.993533
1717	85			14	0.993533
1721	50		50		1.0
1888		83	16		0.994512
1903		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1020	1032	ATG ATG ATG ATG A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain