SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11570

Length: 1051 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11570

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transmembrane amino acid transporter [Arabidopsis thaliana] gb\|AEE28264.1\| transmembrane amino acid transporter [Arabidopsis thaliana]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Sma3	Proline transporter	-	-	1.574e-22	-

Source	Gene names
Sma3	At5g41800; GSVIVT00002452001; GSVIVT00022097001; GSVIVT00034975001; GSVIVT00034976001; GSVIVT00034978001; OJ1007_H05.2; OJ1402_H07.33; Os01g0621200; Os01g0857400; Os05g0586500; OsI_02902; OsI_04494; OsI_21177; OsJ_02643; OsJ_04127; OsJ_19717; P0407B12.40;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08230.2	Transmembrane amino acid transporter family protein chr1:2583715-2586700 REVERSE LENGTH=451	58%
RefSeq	Arabidopsis thaliana	NP_001077487.1	transmembrane amino acid transporter [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002311042.1	proline transporter [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS2

Fln msg: your sequence is shorter than subject: 329 - 492

Fln protein: LTVAPIQSTLLGGQSLKFIYLIYHPNGAMELYEFIIIFGIVMLFLAQMPSFHSLRHLNLISLILCLLYSICVVGGSIHAGNSKLNAEKDYSFTGSSVSKVFGAFNSVAIIATTYGNGIIPEIQATLSPPVSGKMFKGLCICYTVVISTFFSVAVSGYWAFGNRAAGNIFTSFAPAGEPSLVPNWLLFTANICVLLQLFAVALIYSQPSFEVLEGKSGDASNGRFSPRNLLPRLLLRSVYVSVATLIAAMLPFCADILAVIGAFGFIPLDFVFPVVFYGIKFKPSKRSLIFWINTLIAVVFSILGLLGCIAAIRQISVDANSYKLFANL*

Protein Length: 330

Fln nts: TTTGACTGTGGCACCGATCCAATCCACTCTGCTTGGGGGCCAGAGCTTGAAGTTCATCTACTTGATTTATCATCCAAACGGAGCCATGGAGCTGTATGAATTCATCATCATATTCGGGATTGTCATGTTATTCTTGGCCCAGATGCCATCTTTCCATTCTCTTCGCCACTTAAACTTGATTTCCTTGATCTTGTGCTTACTATACAGCATATGTGTGGTTGGCGGATCCATTCATGCAGGAAATTCAAAACTGAACGCAGAAAAGGATTATTCTTTCACTGGAAGCAGTGTCAGCAAGGTCTTTGGAGCTTTCAATTCTGTAGCAATTATTGCAACAACATATGGCAATGGGATTATTCCAGAGATCCAGGCAACATTATCCCCTCCTGTTTCTGGCAAAATGTTCAAAGGCTTGTGCATATGCTACACAGTGGTTATATCAACATTTTTCTCGGTGGCGGTATCGGGTTACTGGGCATTCGGTAACCGGGCAGCAGGCAACATATTCACCAGCTTTGCTCCGGCTGGAGAGCCCTCTCTTGTGCCTAATTGGCTTCTCTTCACAGCCAACATTTGCGTACTCCTCCAATTATTCGCAGTCGCCTTGATATATTCACAGCCCTCTTTTGAGGTTTTGGAGGGGAAATCGGGAGATGCGAGCAATGGAAGATTTTCTCCACGCAATCTGCTACCAAGACTGTTGTTACGGTCAGTATACGTAAGCGTGGCTACTTTGATTGCAGCGATGCTACCATTCTGTGCGGATATACTTGCAGTGATTGGCGCATTTGGGTTCATACCTCTTGACTTTGTTTTTCCTGTAGTCTTTTACGGCATAAAGTTTAAGCCTTCAAAGAGGAGTTTGATATTCTGGATCAACACCCTCATAGCTGTTGTCTTTTCAATCTTGGGATTGTTGGGCTGCATTGCAGCGATTCGCCAAATTTCTGTCGATGCGAACAGTTACAAACTGTTCGCCAACTTATGA___ATTTGTACATTCATCCATGGCAGTAATGCTTTTCACCTATTTTATCTTACCTCCTTCGGTACA

Fln Alignment:

Contig11570___FIIIFGIVMLFLAQMPSFHXXXXXXXXXXXXXXXXXXCVVG---GSIHAGNSKLNAEKDYSFTGSSVSKVFGAFNSVAIIATTYGNG-IIPEIQATL-SPPVSGKMFKGLCICYTVVISTFFSVA-VSGYWAFGNRAAGNIFTSFAPAGEPSLVPNWLLFTANICVLLQLFAVALIYSQPSFEVLE-------------GKSGDAS-NGRFXXXXXXXXXXXXXXXXXXATLIAAMLPFCADILAVIGAFGFIPLDFVFPVVFYGIKFKPSKRSLIFWINTLIAVVFSILGLLGCIAAIRQISVDANSYKLF
B8LQS2_______________FMIMFGIVQLILSQIPDFDQLWWLSIVAAVMSFSYSSIGLGLSIGKVAEGNFHGTLTGVTVGTITGAQKVWQTFQALGDIAFAYSYSMILIEIQDTLRSPPAENKTMKKATVLGVSVTTLFYTLSGCFGYAAFGNSAPGNLLTGFGFYN-----PFWLVDFANACVVVHLVGAYQVFVQPLFAFIEEWCSHKWPRSQFIHKSYNINIPGYGLYKANLFRLVWRTCFVISTTLISMLLPFFNDVVGILGAVGFWPLTVYFPVEMYIAQKKIRRFTTKWMLLQTLSVVSFIVSLAAAAGSIEGIIQDLKSYKPF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
436			40	60	1.0
437	60		40		1.0
460	50		50		1.0
469		50		50	1.0
484		50		50	1.0
489	50		50		1.0
496	66		33		0.997452
510	33	66			0.997452
511		66		33	0.997452
513	33		66		0.997452
523			66	33	0.997452
524	33		66		0.997452
544			66	33	0.997452
556			33	66	0.997452
567		66	33		0.997452
568	33	66			0.997452
735		33		66	0.997452
855	80			20	0.995493
1026		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain