SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11551

Length: 1021 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11551 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%

Source	Gene names
Sma3	At1g69550; At3g04220; At5g11250; F10D13_24; OsI_05113; OsJ_04697; P0504E02.12-1; PHYPADRAFT_119860; PHYPADRAFT_12156; PHYPADRAFT_132267; PHYPADRAFT_132491; PHYPADRAFT_134549; PHYPADRAFT_136879; PHYPADRAFT_141262; PHYPADRAFT_143437; PHYPADRAFT_145827; PHYP

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Protein-tyrosine phosphatase, low molecular weight	IPR017867	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	1.0e-39	47%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	2.0e-39	47%
RefSeq	Populus trichocarpa	XP_002328446.1	tir-nbs-lrr resistance protein [Populus trichocarpa]	2.00386e-43	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 301 - 1071

Fln protein: VSLYNEY*AVNSHHHYYISTGGGCTNSSLPRSIPSKNLRVLHIEGRRLKRLWRHESQAPLQLRELHIDAPLSKVPESIGKLKHLEKVFLKTHYLETISNEFWNLSGLQSVHLTCEQLQTLPESIGNLSGLQSLHLFNCRDLKMLPDSVGNLSGLQSLDLRWCSSLQTLPDSVGNLSGLQSLDLSECRHLKMLPDSVGNLSGLQSLDLRWCSSLQTLPDSVGNLSGLQSLDLS*CSSLQTLPDSVGNLSGLQRLDLHDCFNLQTLPDSLGNLLEQQSGRKRELSESEEDAASEESSNAGCF*

Protein Length: 302

Fln nts: GTCAGTCTGTACAACGAGTATTGAGCAGTGAACAGTCACCACCACTATTATATCTCCACTGGGGGCGGCTGTACTAATTCCTCTTTACCTCGCTCGATTCCATCAAAGAATTTAAGAGTGTTACATATAGAGGGGCGACGCCTGAAAAGACTCTGGCGACATGAATCTCAGGCACCTCTGCAATTGAGAGAGTTGCATATTGATGCTCCCCTTTCAAAGGTTCCAGAGTCCATTGGAAAACTGAAGCACCTTGAAAAAGTTTTTCTGAAAACTCATTATCTTGAAACTATTTCAAATGAATTTTGGAACTTATCAGGACTCCAAAGTGTTCACTTGACGTGCGAGCAGCTGCAGACGCTACCAGAGTCGATTGGGAACCTGTCGGGCCTCCAAAGTCTTCACTTGTTCAACTGCCGCGATCTGAAGATGCTGCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGCGCTGGTGTTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGTCCGAGTGCCGCCATCTGAAGATGCTGCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGAGGTGGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAAAGTCTTGACTTGAGCTAGTGCTCCAGTCTGCAGACACTCCCAGACTCAGTGGGGAACCTGTCGGGCCTCCAACGTCTTGACTTGCACGACTGCTTCAATCTTCAGACGCTGCCAGACTCGCTGGGAAACCTGCTTGAGCAACAAAGCGGACGAAAACGCGAACTATCAGAAAGTGAAGAAGACGCGGCAAGTGAAGAAAGCTCAAATGCAGGATGCTTCTAG___CGGTGTAATTATACGATGTAGAAGAGAAGGTACATTTTGAAATATGTGGATGCGAGCACGAACATGGTCCTGCAATTAAGATTGTTTTCAAATATTTCATTTATTAATGTTAAGATGG

Fln Alignment:

Contig11551___GC-TNSSLPRSIPS-KNLRVLHIEGRRLKRLWRHESQAPLQLRELHID--APLSKVPESIGKLKHLEKVFLK-THYLETISNEFWNLSGLQSVHLT-CEQLQTLPESIGNLSGLQSLHLFNCRDLKMLPDSVGNLSGLQSLDLRWCSSLQTLPDSVGNLSGLQSLDLSEC---RHLKMLPDSVGNLSGLQSLDLRWCSSLQTLPDSVGNXXXXXXXXXXXXXXLQTLPDSVGNLSGLQRLDLHDCFNLQTLPD
C0PQE2_______________GCSTLQTLPDSVGNLTGLQTLYLSGCSTLQTLPDSVGNLTGLQTLNLDRCSTLQTLPDLVGNLKSLQTLDLDGCSTLQTLPDSVGNLTGLQTLNLSGCSTLQTLPDSFGNLTGLQTLNLIGCSTLQTLPDSFGNLTGLQTLNLIGCSTLQTLPDSVGNLTGLQILYLGGCFTLQTLQTLPDLVGTLTGLQTLYLDGYSTLQMLPDSIWNLMGLKRLTLAGATLCRR--SQVGNLTGLQTLHL---TGLQTLKD

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
87		25		75	0.996473
203		14		85	0.993533
302		20	80		0.995493
303		20	80		0.995493
304		20	80		0.995493
326			66	33	0.997452
328		33	33	33	0.997753
337		33		66	1.0
393			80	20	0.995493
395	40		60		1.0
399		40	40	20	1.0
400	80		20		0.995493
401		40	60		1.0
434		85		14	0.993533
440		28		71	1.0
441	28		71		1.0
449	16	83			0.994512
463		50	50		1.0
465		87		12	0.992554
473			87	12	0.992554
493		33	66		1.0
506		80	20		0.995493
511		50	25		0.995533
521			75	25	0.996473
539	75		25		0.996473
544	50	25	25		0.995533
547			66	33	0.997452
554	66		33		0.997452
697		83	16		0.994512
884			75	25	0.996473
887	25		75		0.996473
922	50		50		1.0
935	50		50		1.0
950			25	75	0.996473
960		50	25		0.995533
961	25	25	50		0.995533
962	25	75			0.996473
963		75	25		0.996473
964		75	25		0.996473
965		75		25	0.996473
970	25			75	0.996473
971		25	75		0.996473
985			66	33	0.997452
993		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain