SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11528

Length: 1592 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11528

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	large subunit ribosomal protein L24e [Arabidopsis thaliana] ref\|NP_001078059.1\| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp\|O22165.1\|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb\|AAC31838.1\| 60S ribosomal prote	-	-	1.4013e-45	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	0.0	-
Sma3	TRASH	IPR011017	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44860.1	Ribosomal protein L24e family protein chr2:18501034-18502128 REVERSE LENGTH=159	74%
RefSeq	Arabidopsis thaliana	NP_001078059.1	large subunit ribosomal protein L24e [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002328175.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH8

Fln msg:

Fln protein: MKLEKCWYCSSTIYPGHGIQFVRNDCKIFQFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKEKIMRVKVSISKQQKEIVDDRI*

Protein Length: 175

Fln nts: CGTCGTGACCTTGGCTGTCATCAGGATTTCAGAAAACCCAACATCCTGACTCCTAACTATGGTTTTTGGTTTCCTGCAGCCTTCAAGAATGGAAGAGCCATAGGTGACAGAGGAAGCGATCAAAACACAGTTTCTTACAATGGTCGTGACGATGTATGTATGGGATAAAATTAACGTATTTGATTTATTTGTAGCACAGGCGTACTCAGTGTGGCTGTACTCAGTGTGGCTTTACCTGGCGTCCTCGCATCACGCTTTAATGCTGCCGTGCTTTCTGTTGCAACCCTCGCATCACGCTTTAATGCTGCCGTGCTTTCTGTTGCAACCCTCCGCATCACGCTTTAATGCTGCGCTGCGTCTTCGTTTGCTTAACATCTCACGAACGAGTCTCGGATGCTGGAAATCGTGAGCCGGAGCTGTTGTTTAGAAAACCTCAACACAACATCATTTCTTCCAGCCTTTATGACTACTGAAGTTCTCTCCAGCCACTAAATCCATTGCTTTTCCTTAATCACAGCTTAGACACAGGAAGGGTTAGGACTAGCGCGAGGAGCACAGCCAAGCA_-_ATGAAGCTCGAGAAGTGTTGGTACTGTTCGTCTACAATTTATCCCGGTCATGGGATCCAATTCGTGCGCAATGATTGCAAGATATTCCAGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTCGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGACCTTACTAAGGACACAACGTTTGAGTTTGAGAGAAGAAGAAACAGGCCCGAGAGATACGATAGAAATGTTGTTCAAAATACCTTGAAGGCCATCAAGAAGATTGAGGAAGTTCGTATTAGCAGGGAGGCTAAATTATGGGAGAACAGGATGAAGGGCAATAAAGCTAAACAAATGAAAGAGGATACTGGAGAATTGGAGCAGGGCATTCATTTGGTGAAAGCTCCTCTTGCCATGCAAGAAGAACCTGGGCTTGCTTTGCCAAGAAAGGAAAAGATTATGAGAGTTAAAGTTTCCATCTCTAAGCAACAAAAAGAGATTGTGGATGACAGAATATAG___GCGGGCATAATCATCCATACTTATGGGGAGATTGTGGATGTTAAGATTTATTATTATCCACTCCAGTTCCTCGACAGTATTCATTGGGAAAGTGTACATAATTTTACTGGCCACTCTCTCTTCATTTTCCAACTGTAGTTTAACCATGTTCTGTCAGTATGCCCCTGGCTGCTGATCATGTTGCCAAGGTGCTGCATCCCATTTTGCCTCCGTTGCCTTTATTCTCAACTTATTAGGGCATCTGTGTTAATATTTTCACAATGTCTACATTGGGCACAACATCCATGGCTGTCTGTAGCCTGGCATGCAACACATGGGCAATTTTTAACATTCTTTCTTTCTTGTCTATTTGGTGTTTCGAACTCCCTTTCACAATACCAATGCTTGTAGATTTTGCACCTTCCCTATTTTTAAATTCCTTCTGTTAGTATTAGTTGGATTTTACCAGTGGTAGTTGGATTTTGCCAGCTAAAACGCTATCCGAAAATGTTTGTAAAACTTGACG

Fln Alignment:

Contig11528___MKLEKCWYCSSTIYPGHGIQFVRNDCKIFQFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKDLTKXXXXXXXXXXXXXXXXXXXVVQNTLKAIKKIEEVRISREAKLWENRMKGNKAKQMKEDTGELEQGIHLVKAPLAMQEEPGLALPRKEKIMRVKVSISKQQKE
A9NKH8_______________MRLEKCWFCSSTIYPGHGIQYVRNDCKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKELTKDTTFEFERRRNRPERYDRNVVQNTLKAIKKIEEVRVSREAKLWENRMKGNKAKQIKEDARELEQGIHLIKAPLAMQEEPGLTLPTKAEKMKVKVSISKQQKE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
1133	90		10	0.90298
1168	10	90		0.90298
1281	87	12		0.999964

SSRs (tot: 1)

Start position	End position	Sequence	Length
1418	1430	TTCT TTCT TTCT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain