SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11520

Length: 1009 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11520

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homoserine dehydrogenase n=1 Tax=Picea sitchensis RepID=D5AEG5_PICSI	-	-	0.0	84%
FL-Next	sp=Homoserine dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Homoserine dehydrogenase	-	-	1.06639e-42	-

Source	ECs	Term	Type	e value	Identity
Sma3	Homoserine dehydrogenase.	EC:1.1.1.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		0.0	%
Sma3	Cysteine and methionine metabolism	00270		0.0	%
Sma3	Lysine biosynthesis	00300		0.0	%
Sma3	Biosynthesis of plant hormones	01070		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Aspartate kinase.	EC:2.7.2.4	-	2.133e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260	2.133e-18	%
Sma3	Cysteine and methionine metabolism	00270	2.133e-18	%
Sma3	Lysine biosynthesis	00300	2.133e-18	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	2.133e-18	%
Sma3	Biosynthesis of plant hormones	01070	2.133e-18	%
Sma3	Metabolic pathways	01100	2.133e-18	%
Sma3	Biosynthesis of secondary metabolites	01110	2.133e-18	%

Source	Gene names
Sma3	AK-HSDH; AK-HSDH I; AK-HSDH II; AKHSDH1; AKHSDH2; At1g31230; At4g19710; At5g21060; CHLREDRAFT_196320; F28K20.19; GSVIVT00017396001; GSVIVT00032075001; HSD1; LOC_Os11g03470; LOC_Os12g03190; MICPUCDRAFT_32181; MICPUN_88465; OJ1790_D02.29-1; OSJNBa0044K01.3;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	aspartate kinase activity	GO:0004072	Molecular Function	-
Sma3	homoserine dehydrogenase activity	GO:0004412	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	cellular amino acid biosynthetic process	GO:0008652	Biological Process	-
Sma3	aspartate family amino acid biosynthetic process	GO:0009067	Biological Process	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Aspartate kinase domain	IPR001341	-	-
Sma3	Homoserine dehydrogenase, catalytic	IPR001342	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aspartate/homoserine dehydrogenase, NAD-binding	IPR005106	-	-
Sma3	Bifunctional aspartokinase/homoserine dehydrogenase I	IPR011147	-	-
Sma3		IPR015706	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aspartate kinase, conserved site	IPR018042	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G21060.2	Glyceraldehyde-3-phosphate dehydrogenase-like family protein chr5:7149153-7152745 REVERSE LENGTH=378	67%
RefSeq	Arabidopsis thaliana	NP_197605.1	glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002328225.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEG5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 223 - 395

Fln protein: *SHSQKKLLEQACLSNVSLDRLIAFGDPIQCITGALSGTLGYVMSELQGGHPFSEIVRAAKILGYTEPDPRDDLSGMDVARKALILARLLGWRINLENVEVESLYPSEMGPDAMSIEDFLNKGLPTLDEEMVERIKNAASNGNVVRYVCKIDNSRCKVGLLELPKNSPIGQLKGSDNLVEVYSRCYKALPLVIQGAGAGNDTTAAGVLADIFDLQDLFHSCD*

Protein Length: 224

Fln nts: CATAAAGCCACTCACAGAAAAAATTGTTGGAGCAGGCTTGCCTGTCAAATGTTTCTTTGGATCGTTTAATAGCATTCGGTGATCCTATACAGTGCATCACGGGTGCTCTAAGTGGTACATTGGGATATGTAATGAGTGAACTACAAGGAGGACACCCTTTCAGTGAAATTGTTCGAGCAGCTAAAATCCTGGGTTACACAGAACCAGATCCACGTGATGACCTTAGTGGAATGGATGTGGCAAGGAAGGCTTTGATCCTAGCTCGGTTGCTTGGCTGGCGAATCAACTTGGAGAATGTTGAGGTTGAGAGTCTTTACCCTTCTGAAATGGGACCAGATGCTATGTCAATTGAGGATTTCCTAAATAAAGGCCTTCCAACACTTGATGAGGAAATGGTAGAGAGGATTAAGAATGCTGCTTCAAATGGCAATGTTGTTCGTTATGTGTGTAAAATTGACAATTCCAGGTGTAAAGTAGGGCTTTTGGAGCTGCCGAAAAATTCTCCAATAGGGCAACTGAAAGGAAGCGATAATCTGGTAGAGGTATATAGTCGATGCTACAAGGCACTACCTCTGGTTATTCAAGGAGCTGGAGCTGGTAATGACACCACAGCGGCAGGAGTTCTAGCGGATATCTTTGATTTACAGGATCTATTTCATTCTTGTGACTAG___GTTCCTCTTTTTCAGAAAGAAAAGTATTATATTGAGGCAATATATACAAAATGTTCTGATGGATCTGTAAAACGATCTCATGTGAGATAGGCTGATGGAGCAGAAAGCAAAAGCATCAAACAGATAACTAGGTTCCTCTATGTTGTAACTATTTGCTACTCCTTTGAACTGTTTGAAGAAACCTTTGCCATCTTGCACGATGTTTTCATGTGTGAATTTATTTGCGAACTCAAACTTCATATCATAAGAATGGGATAATTGATATCTTGATTTCTTCCGTCAGTTCTGTTACAATTTGATCTAGTCAGTTTGATGCTAGGCAGGGTGTCGTAGTCATC

Fln Alignment:

Contig11520___SLDRLIAFGDPIQCITGALSGTLGYVMSELQGGHPFSEIVRAAKILGYTEPDPRDDLSGMDVARKALILARLLGWRINLENVEVESLYPSEMGPDAMSIEDFLNKGLPTLDEEMVERIKNAASNGNVVRYVCKIDNSRCKVGLLELPKNSPIGQLKGSDNLVEVYSRCYKALPLVIQXXXXXXXXXXXXVLADIFDLQDLFHSCD
D5AEG5_______________TLNRLIASGDTIQCITGALSGTLGYVMSELQGGHPLSEVVQAAKILGYTEPDPRDDLSGMDVARKALILARLLGRQINLENVEVESLYPSEMGPDDMSVEDFLNKGLPTLDEAMEERIKNAASNDNAVRYVCTIDNSRCKVGLLELPENSPIGQLKGSDNLVEVYSRCYKALPLVIQGAGAGNDTTAAGVLADIVDLQDLFHSHD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
48	33			66	0.997452
73	25	75			0.996473
77		75		25	0.996473
113	33		66		0.997452
148			75	25	0.996473
411		10	90		0.90298
413	90			10	0.90298
423	87		12		0.992554
581	33			66	0.997452
583		66	33		0.997452
584	66		33		0.997452
585	66		33		0.997452
596	20	80			0.995493
601	80		20		0.995493
637			25	75	0.996473
651		25		75	0.996473
664		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain