SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11514

Length: 512 nt

UniGene Fasta

>sp_v3.0_unigene11514
AATATTGATTACATCTCGGGACAGAGATGTTCTTACAAGCTCAAGAGTTGAAGAGGCATCGATTTACAGGTTAAATGGCCTTAATACACAATATTCGCGAAAGCTTTTTTGTTTCCATGCTTTCCACAGAGCATCTCCCCTCCAAGGATATGAATATTTAGTGGATGAATTCTTAACCGTCTGTGACGGATTGCCTTTATCATTGGAAGTTCTTGGAGCATTTTTTTATGGAAAAAATGACAGATCTTATTGGGAAGATCAATTGGATAGGTTTCAACAAATTCTTCCCTATGAGATAGAAAAGAAGTTGAAATTTAGTTTTGATGCGCTTAATATAGAGGAACAACAGATATTTTTAGATATTGCCCGTTCTTTCATAGGAGAAAGGACTGAAACTGCAATACGAATATGGAAGGGATACGGGTGGAGAGGTTTGCTGGGGTTTCAAAGTCTTCTGGAAAAGCGTCTAGTACAGGTGGATAGTGAAAATTGTATATATATGCATGATCATC

Ace file of the UniGene sp_v3.0_unigene11514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein GM09 (Fragment) n=3 Tax=Pinus monticola RepID=Q6WE63_PINMO	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	NBS/LRR	-	-	3.401e-08	-

Source	Gene names
Sma3	RGA;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMX8

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 170 - 653

Fln protein: ILITSRDRDVLTSSRVEEASIYRLNGLNTQYSRKLFCFHAFHRASPLQGYEYLVDEFLTVCDGLPLSLEVLGAFFYGKNDRSYWEDQLDRFQQILPYEIEKKLKFSFDALNIEEQQIFLDIARSFIGERTETAIRIWKGYGWRGLLGFQSLLEKRLVQVDSENCIYMHDH

Protein Length: 171

Fln nts: AATATTGATTACATCTCGGGACAGAGATGTTCTTACAAGCTCAAGAGTTGAAGAGGCATCGATTTACAGGTTAAATGGCCTTAATACACAATATTCGCGAAAGCTTTTTTGTTTCCATGCTTTCCACAGAGCATCTCCCCTCCAAGGATATGAATATTTAGTGGATGAATTCTTAACCGTCTGTGACGGATTGCCTTTATCATTGGAAGTTCTTGGAGCATTTTTTTATGGAAAAAATGACAGATCTTATTGGGAAGATCAATTGGATAGGTTTCAACAAATTCTTCCCTATGAGATAGAAAAGAAGTTGAAATTTAGTTTTGATGCGCTTAATATAGAGGAACAACAGATATTTTTAGATATTGCCCGTTCTTTCATAGGAGAAAGGACTGAAACTGCAATACGAATATGGAAGGGATACGGGTGGAGAGGTTTGCTGGGGTTTCAAAGTCTTCTGGAAAAGCGTCTAGTACAGGTGGATAGTGAAAATTGTATATATATGCATGATCATC

Fln Alignment:

Contig11514___ILITSRDRDVLTSSRVEEASIYRLNGLNTQYSRKLFCFHAFHRASPLQGYEYLVDEFLTVCDGLPLSLEVLGAFFYGKNDRSYWEDQLDRFQQILPYEIEKKLKFSFDALNIEEQQIFLDIARSFIGERTETAIRIWKGYGWRGLLGFQSLLEKRLVQVDSENCIYMHDH
B8LMX8_______________ILITSRDMGVLRSSKIDKSSIYTLTWLNKQHSLELFCSHAFSQAYPLAGFERLVDNFLHCCKGLPLSLKVFGALLYSK-DISQWEDELESLQQILPSDIHETLIISYRSLNKEEKEIFLDIACFFINQNRDAAISTWNGSGWRAKRGFLNLQDKSLVEVDGENCIHMHDH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
308		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain