SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11504

Length: 682 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene11504 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] dbj\|BAB10542.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK76728.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85047.1\| unknown protein [Arabidopsis thaliana] gb\|AED96215.1\| mate eff	-	-	4.0e-28	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	TRANSPARENT TESTA 12 protein, putative	-	-	3.99e-31	-

Source	Gene names
Sma3	AT1G66760; At1g15170; At1g66760; At1g71140; At1g73700; At2g04050; At2g04090; At2g04100; At2g34360; At5g52450; B1089G05.12; B1423D04.35; F23N20.13; F25P22.12; F4N21_11; F9L1.11; GSVIVT00006280001; GSVIVT00015983001; GSVIVT00015984001; GSVIVT00017759001; GS

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52450.1	MATE efflux family protein chr5:21289042-21291749 REVERSE LENGTH=486	5.0e-34	63%
RefSeq	Arabidopsis thaliana	NP_200058.1	mate efflux domain-containing protein [Arabidopsis thaliana]	7.0e-34	63%
RefSeq	Populus trichocarpa	XP_002315903.1	predicted protein [Populus trichocarpa]	5.0e-37	70%

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
144	28		71		1.0
181			28	71	1.0
202		71		28	1.0
210	28	71			1.0
217		71		28	1.0
218	14	85			0.993533
238	28		71		1.0
245		33		66	1.0
249		20		80	0.995493
262	12	87			0.992554
294	12		87		0.992554
307		14		85	0.993533
321	11			88	0.923564
322		11	88		0.923564
337	87	12			0.992554
339	12		87		0.992554
340	12	87			0.992554
350		12	87		0.992554
373		12	87		0.992554
376	33	66			1.0
377	83		16		0.994512
378			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain