SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11469

Length: 3020 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene11469
CGTCGTGACCTTGGCTGTCATTATGGTTACTTGTGTATGGTAGCTCGAAGACCTATCACAGAGGCCGCAGGGTGGTCGCACCAGGGGCTCAGGGAGCTTCATAGGGTGGTATCTTCATAGGACGGAGCATCTCAGCCCTTTTGTTCCCATGTCAAGGAAACATATAAAGGGCGGCAGAGGATTTCCACTCGTTGAACATTGCTGCTTATTGTGTCGACGGATACAGTGGTGTATACACCAGAGTTCATTGAAGGATTTCACTTGATATATTTTTACCTTTTAAAAGTTCACCTGATTCAGAAGACATTCTGTGGAATCTTAGTGGATGTTGGAGTAATTTTTTTGGCCAGAATCTTGTTTATTATAAATTTTTGCAAGGTTTTGTTTGGCTTATCAAGCAAACCAATTGAGGGTTTAAATTTTCAGAATTGGATTGTCTACTTGGTCAACATTTGCATACAGTAACGTGGTTTCACAGATTTTGGACATTTGGATAGGTGTAGAAGAGTGCTTTGTGATCAACGTTAGCAGAGTTGTGGGATTGTACGGGACGTTGCAGAGTATATACACTATCTTGTACAGCTTCTGTAAATATGGTTCGGACTAAAAAGGAGCGAGTTTCTTTACCGCCCGGTTTTCGCTTCCACCCAACGGATGAGGAACTTATTCTATATTATCTGAAGAGAAAAGTGTGTAATAGGCCACTGAAGCTTGATGCAATAGCGGAGGTTGATGTATACAAGTGTGAGCCTTGGGATCTTCCCGAAAAATCTCGTTTACAGAGCCGGGACTTAGAATGGTATTTTTTTAGTGCTAAAGACAGAAAATATCCTAAAGGATCTCGAACAAATCGAGCGACTAGAGTAGGTTACTGGAAAGCCACTGGTAGGGATCGATCTATTGAAAATGACGAACGGACAGTAGGTATGAAGAAGACTTTAATATTCTACACCGGGCGTGCTCCTTCTGGTATACGGACCAATTGGGTTATGCATGAGTACAGGCTTGAAGATAAACAACTGAGACATTCCGATGTTGTTCAGGACTCCTATGTAATTCTCAAACTATATGAGAAGAGTGGCCCAGGTCCGAAAAATGGGGAGCAACATGGGGCTCCATTTAGAGAAGAAGATTGGAATGAAAATACCAATGAGGATGTTTTGACATTGCCAACAGTAACAGATGCTTCTCCACTTGCTATACAACTTTCAGTTGGCAACTTAGTTGAAAACAATGAGGATATATCTTCCAAGCAAGACCCAGTTGTGGATGATTCTTTTGTTCCAGATCAATTGCCACTCTTGCCAGATGAACTATTTGTTCCTTCAGGAAACTCATTATTTCCTGATGATGATGATGTGTTGAATGAATTATTGTGCGAATGCCTTTCTGGTCCAGAGAACAGTAGTATGCTGCAGCTGCATCAGTTTAATGATGTCCAGAAGCAGGATGACATTATTCCCAGTGAAAGTTCAAGGTGCACAATAATGCATAAGGAAGGAACAGAAATTTTGTCTGAACAGGATGACATTAGCTTTCTCTTTGATGAACAGCATGCCAGGGCGAATATTTCTCAGGGTGATGGCTGTAGCTTGCTTCGACAAGGCAGTATGGAAAAGATGATAGATTCTTTCCTACAAGATGTTCGAACACCATCCTCTTCTCATTTAGCAGGCGATTTCCTAGAACTCAATGATCTCACAAGCGAGCTGGAGGGAAATACTTCTGGTCTAGGAAGTTTTAATGAGCTCAATGAGTTCTTTGATGCCTCAGATAATATGCATGGTTTCTCTGATGCTTCAATGATGTTTAATGGAATGTGCAACCCAGTAGAGGGCATTACCATGGGCTATCCTGAAAATTATCGGTACGATGTGTTTCCTGAGGCATCTAATGTTTATGTAGAGCCAAATTTGGCACAAGTAGGAGATAATTTAGCATCTCAGTTTTGCACAGAAGGGCAAATGATGGATATAAATAGTAACTTCTTTGCTTCTGGGGAAGTAAATGATACTGGGCTTTTGGTACCTTCTATAGGTGGTTCTGAGTACACTACAGTAGCACAACATATGAATGCTGCATTGCTGGGGCAGCAGGACAATAATGAATCCACCCCAGGCTCACTATCAAGATTTATGAATATACTGGGATCCATTGATTCACTCCCTGCATCAGCTGCTGAATATCCTTTGAAAAAGGGGTCTTTGAGTAAACAGCCAAGCTTTGGTTCGATACATGTTAGAGCTGCAAATGCTCATCTTGCTGCTGTAACAGTGGCCTGCACATGCTCTAATAATCTGGAACACAAAAAGGGGGATGCCTGCACATGCTCTAATAATATGGAACACAAAAAGGGGGATGCAACTGGGTCTTGCACTTGCTCGTCTGATGTATCTTATGGAATAATGAAAGGTTCATTTTTGGCTAATAGCTCTGTAATCAGTCCTGTTGACCTAAAATCAAACATCTCTAAAGCTTCAGAAAAACCAGCAGTCAGGAACACAAGGGGGTTCGTTTTTGTGTTCTTCTTAGGAGCCATATCAGCTCTGGCGTGGCTTTTGATGCTTGGAGCTACTATTAAATTTGGCGGGTGTATCTTCAAGTATTTATTATCGTAGTAGAAGCTCCTTTTGGATCAACAAACATGTTATTTCGTATTGCAAAATTTTATCTATAAGTAATTATTTGGCAGTACAAAACTGCATATTACTGTTTAACTGAAGAATCTGAACTCCTTATTCTTTTGGATATAAACAATTCAGAAGAGAATCTGGGTATGGAATTTTATTTGTATTGTAAACTCTTCATATAACAAGTTTTGCAAATCCGTGGCCTTTAAAGCAGGGGAACGTACATTGAAATGGCATTCTAGTACTGTAGGAGACTTGGAAGGGCAAACTTAGTTGTTCAGATGATTTGGTCTGCCTAACAAACTTTCATACAGTTGTAGTATGATGTCTTATGTCTCTCATTTATGTTCTCCTTTCACCGATATAATTCTTTTTGTTTTCTTTGTGCAA

Ace file of the UniGene sp_v3.0_unigene11469 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain-containing protein 78 [Arabidopsis thaliana] sp\|Q84K00.2\|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb\|CAB85547.1\| putative protein [Arabidopsis thaliana] gb\|AAM20460.1\| putative protein [Arabidopsis thaliana] gb	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	AT4g10350; AT4g36160; AT5G09330; At1g32870; At1g33060; At1g33280; At1g34190; At1g54330; At1g65910; At1g69490; At1g71930; At1g79580; At2g18060; At2g24430; At3g03200; At3g10480; At3g10490; At3g10500; At3g17730; At3g29035; At4g10350; At4g27410; At4g36160; At

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to brassinosteroid stimulus	GO:0009741	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-
Sma3	xylem development	GO:0010089	Biological Process	-
Sma3	response to red light	GO:0010114	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	formation of organ boundary	GO:0010160	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	secondary shoot formation	GO:0010223	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	regulation of timing of organ formation	GO:0048504	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04410.1	NAC2, anac078 NAC domain containing protein 2 chr5:1243980-1246416 FORWARD LENGTH=567	0.0	55%
RefSeq	Arabidopsis thaliana	NP_196061.1	NAC domain-containing protein 78 [Arabidopsis thaliana]	0.0	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV4

Fln msg:

Fln protein: MVRTKKERVSLPPGFRFHPTDEELILYYLKRKVCNRPLKLDAIAEVDVYKCEPWDLPEKSRLQSRDLEWYFFSAKDRKYPKGSRTNRATRVGYWKATGRDRSIENDERTVGMKKTLIFYTGRAPSGIRTNWVMHEYRLEDKQLRHSDVVQDSYVILKLYEKSGPGPKNGEQHGAPFREEDWNENTNEDVLTLPTVTDASPLAIQLSVGNLVENNEDISSKQDPVVDDSFVPDQLPLLPDELFVPSGNSLFPDDDDVLNELLCECLSGPENSSMLQLHQFNDVQKQDDIIPSESSRCTIMHKEGTEILSEQDDISFLFDEQHARANISQGDGCSLLRQGSMEKMIDSFLQDVRTPSSSHLAGDFLELNDLTSELEGNTSGLGSFNELNEFFDASDNMHGFSDASMMFNGMCNPVEGITMGYPENYRYDVFPEASNVYVEPNLAQVGDNLASQFCTEGQMMDINSNFFASGEVNDTGLLVPSIGGSEYTTVAQHMNAALLGQQDNNESTPGSLSRFMNILGSIDSLPASAAEYPLKKGSLSKQPSFGSIHVRAANAHLAAVTVACTCSNNLEHKKGDACTCSNNMEHKKGDATGSCTCSSDVSYGIMKGSFLANSSVISPVDLKSNISKASEKPAVRNTRGFVFVFFLGAISALAWLLMLGATIKFGGCIFKYLLS*

Protein Length: 676

Fln nts: CGTCGTGACCTTGGCTGTCATTATGGTTACTTGTGTATGGTAGCTCGAAGACCTATCACAGAGGCCGCAGGGTGGTCGCACCAGGGGCTCAGGGAGCTTCATAGGGTGGTATCTTCATAGGACGGAGCATCTCAGCCCTTTTGTTCCCATGTCAAGGAAACATATAAAGGGCGGCAGAGGATTTCCACTCGTTGAACATTGCTGCTTATTGTGTCGACGGATACAGTGGTGTATACACCAGAGTTCATTGAAGGATTTCACTTGATATATTTTTACCTTTTAAAAGTTCACCTGATTCAGAAGACATTCTGTGGAATCTTAGTGGATGTTGGAGTAATTTTTTTGGCCAGAATCTTGTTTATTATAAATTTTTGCAAGGTTTTGTTTGGCTTATCAAGCAAACCAATTGAGGGTTTAAATTTTCAGAATTGGATTGTCTACTTGGTCAACATTTGCATACAGTAACGTGGTTTCACAGATTTTGGACATTTGGATAGGTGTAGAAGAGTGCTTTGTGATCAACGTTAGCAGAGTTGTGGGATTGTACGGGACGTTGCAGAGTATATACACTATCTTGTACAGCTTCTGTAAAT_-_ATGGTTCGGACTAAAAAGGAGCGAGTTTCTTTACCGCCCGGTTTTCGCTTCCACCCAACGGATGAGGAACTTATTCTATATTATCTGAAGAGAAAAGTGTGTAATAGGCCACTGAAGCTTGATGCAATAGCGGAGGTTGATGTATACAAGTGTGAGCCTTGGGATCTTCCCGAAAAATCTCGTTTACAGAGCCGGGACTTAGAATGGTATTTTTTTAGTGCTAAAGACAGAAAATATCCTAAAGGATCTCGAACAAATCGAGCGACTAGAGTAGGTTACTGGAAAGCCACTGGTAGGGATCGATCTATTGAAAATGACGAACGGACAGTAGGTATGAAGAAGACTTTAATATTCTACACCGGGCGTGCTCCTTCTGGTATACGGACCAATTGGGTTATGCATGAGTACAGGCTTGAAGATAAACAACTGAGACATTCCGATGTTGTTCAGGACTCCTATGTAATTCTCAAACTATATGAGAAGAGTGGCCCAGGTCCGAAAAATGGGGAGCAACATGGGGCTCCATTTAGAGAAGAAGATTGGAATGAAAATACCAATGAGGATGTTTTGACATTGCCAACAGTAACAGATGCTTCTCCACTTGCTATACAACTTTCAGTTGGCAACTTAGTTGAAAACAATGAGGATATATCTTCCAAGCAAGACCCAGTTGTGGATGATTCTTTTGTTCCAGATCAATTGCCACTCTTGCCAGATGAACTATTTGTTCCTTCAGGAAACTCATTATTTCCTGATGATGATGATGTGTTGAATGAATTATTGTGCGAATGCCTTTCTGGTCCAGAGAACAGTAGTATGCTGCAGCTGCATCAGTTTAATGATGTCCAGAAGCAGGATGACATTATTCCCAGTGAAAGTTCAAGGTGCACAATAATGCATAAGGAAGGAACAGAAATTTTGTCTGAACAGGATGACATTAGCTTTCTCTTTGATGAACAGCATGCCAGGGCGAATATTTCTCAGGGTGATGGCTGTAGCTTGCTTCGACAAGGCAGTATGGAAAAGATGATAGATTCTTTCCTACAAGATGTTCGAACACCATCCTCTTCTCATTTAGCAGGCGATTTCCTAGAACTCAATGATCTCACAAGCGAGCTGGAGGGAAATACTTCTGGTCTAGGAAGTTTTAATGAGCTCAATGAGTTCTTTGATGCCTCAGATAATATGCATGGTTTCTCTGATGCTTCAATGATGTTTAATGGAATGTGCAACCCAGTAGAGGGCATTACCATGGGCTATCCTGAAAATTATCGGTACGATGTGTTTCCTGAGGCATCTAATGTTTATGTAGAGCCAAATTTGGCACAAGTAGGAGATAATTTAGCATCTCAGTTTTGCACAGAAGGGCAAATGATGGATATAAATAGTAACTTCTTTGCTTCTGGGGAAGTAAATGATACTGGGCTTTTGGTACCTTCTATAGGTGGTTCTGAGTACACTACAGTAGCACAACATATGAATGCTGCATTGCTGGGGCAGCAGGACAATAATGAATCCACCCCAGGCTCACTATCAAGATTTATGAATATACTGGGATCCATTGATTCACTCCCTGCATCAGCTGCTGAATATCCTTTGAAAAAGGGGTCTTTGAGTAAACAGCCAAGCTTTGGTTCGATACATGTTAGAGCTGCAAATGCTCATCTTGCTGCTGTAACAGTGGCCTGCACATGCTCTAATAATCTGGAACACAAAAAGGGGGATGCCTGCACATGCTCTAATAATATGGAACACAAAAAGGGGGATGCAACTGGGTCTTGCACTTGCTCGTCTGATGTATCTTATGGAATAATGAAAGGTTCATTTTTGGCTAATAGCTCTGTAATCAGTCCTGTTGACCTAAAATCAAACATCTCTAAAGCTTCAGAAAAACCAGCAGTCAGGAACACAAGGGGGTTCGTTTTTGTGTTCTTCTTAGGAGCCATATCAGCTCTGGCGTGGCTTTTGATGCTTGGAGCTACTATTAAATTTGGCGGGTGTATCTTCAAGTATTTATTATCGTAG___TAGAAGCTCCTTTTGGATCAACAAACATGTTATTTCGTATTGCAAAATTTTATCTATAAGTAATTATTTGGCAGTACAAAACTGCATATTACTGTTTAACTGAAGAATCTGAACTCCTTATTCTTTTGGATATAAACAATTCAGAAGAGAATCTGGGTATGGAATTTTATTTGTATTGTAAACTCTTCATATAACAAGTTTTGCAAATCCGTGGCCTTTAAAGCAGGGGAACGTACATTGAAATGGCATTCTAGTACTGTAGGAGACTTGGAAGGGCAAACTTAGTTGTTCAGATGATTTGGTCTGCCTAACAAACTTTCATACAGTTGTAGTATGATGTCTTATGTCTCTCATTTATGTTCTCCTTTCACCGATATAATTCTTTTTGTTTTCTTTGTGCAA

Fln Alignment:

Contig11469___ERVSLPPGFRFHPTDEELILYYLKRKVCNRPLKLDAIAEVDVYKCEPWDLPEKSRLQSRDLEWYFFSAKDRKYPKGSRTNRATRVGYWKATGRDRSIENDERTVGMKKTLIFYTGRAPSGIRTNWVMHEYRLEDKQLRHSDVVQDSYVILKLYEKSGPGPKNGEQHGAPFREEDWNENTNEDVLTLPTVTDASPLAIQLSVGNLVENNEDISSKQDPVVDDSFVP--DQLPLLPDELFVPSGNSLFPDDDDVLNELLCECLSGPENSSMLQLHQFNDVQKQDDIIPSESSRCTIMHKEGTEILSEQDDISFLFDEQHARANISQGDGCSLLR-QGSM------EKMIDSFLQDVRTPSSSHLAGDFLELNDLTSELEGNTSGLGSFNELNEFFDASDNMHGFSDASM---------------MFNGMCNPVEGITMGYPENYRYDVFPEASNVYVEPNLAQVGDNLASQFCTEGQMMDINSNFFASGEVNDTGLLVPSIGGSEYTTVAQHMNAALLGQQDNNESTPGSLSRFMNILGSIDSLPASAAEYPLKKGSLSKQPSFGSIHXXXXXXXXXXXXXACTCSNNLEHKKGDACTCSNNMEHKKGDATGSCTCSSDVSYGIMKGSFLANSSVISPVDLKSNISKASEKPAVRNTRGFVFVFFLGAISALAWLLMLGATIKFGGCIFK
B8LQV4_______________DQVSLQPGFRFHPTDEELVSYYLKRKVRGQRFDFNAISEIDLYKFEPRDLPGKSCLQSRDLEWYFFNPKDRKYPNGSRTNRSTKDGYWKTTGKDRPVCSASQTVGMKKTLVYHTGRAPRGERTNWVMHEYRLEGKDLKMSNPAQDSYVLCRVFQKSGPGPKNGEQYGAPFREEDWNADIFSKAEEISSV----------EMDHVATNDSTLSKTEEIIAHCGGVPALDNVIVSPVEELAPSTYDY--DIDSILNTWIDNPDDIEPNAKENELVQGN--QEWDALISKETLEQTVMQTEDGEVF---NDLGDLFGNINNPVQRNTEDYVDIFHVQDSMRVGEKGSTSIDPFLSNLHESSPAFLDGSFLELKDLVNPVELNTSDLETFDRKDTFFDVSDCPDNFAAPSMALHPKESQNQHTDLSFLRGKQEMSTGVSEQTQIPYGYSVLQEAYNVERHLYSSPVGENSGASYWMQEQWM---NNGFAFSEIDDARNLAPS-ADDEFMMTRQDVSAGMQSSKNHEDYDTGSSSKFASLLASIHARPASAAEYPFRSKYLSQLPKVDSVTVETAINHVAAVSVTCACSMVLEPK----------IEHSSGDLLSTCSCG--VANGIVQGSFVSSWPASSSIGFKSADSVTPRKTSSGLHAGFLFVFFLGAISVFVWALVVGGTFILGKYIYK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
2989	75	25			1.0
2990	75	25			1.0
2991		25	75		1.0
2992	25			75	1.0
2993	50	25		25	1.0
2995	66	33			1.0
2996	40	60			1.0
2998	40	40		20	1.0
2999		25	25	50	0.995533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1662	1675	CAT CAT CAT CAT CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain