SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11450

Length: 1415 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11450

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative calcium-binding protein CML25 [Arabidopsis thaliana] sp\|Q9FYK2.1\|CML25_ARATH RecName: Full=Probable calcium-binding protein CML25; AltName: Full=Calmodulin-like protein 25 gb\|AAF97973.1\|AC000103_23 F21J9.28 [Arabidopsis thaliana] gb\|ABE65653.1\| p	-	-	6.0e-24	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Polcalcin Jun o 2	-	-	2.303e-06	-

Source	Gene names
Sma3	At1g24620; B1147A04.18; CML10; CML18; CML25; CML28; CML5; F21J9.28; GSVIVT00017815001; GSVIVT00025318001; GSVIVT00026362001; LOC_Os01g72100; LOC_Os05g13580; LOC_Os12g12730; LOC_Os12g41110; OJ1532_D06.3; Os01g0949500; Os05g0223000; Os12g0228800; Os12g06038

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24620.1	EF hand calcium-binding protein family chr1:8723893-8724453 REVERSE LENGTH=186	9.0e-30	46%
RefSeq	Arabidopsis thaliana	NP_173866.1	putative calcium-binding protein CML25 [Arabidopsis thaliana]	1.0e-29	46%
RefSeq	Populus trichocarpa	XP_002314786.1	predicted protein, partial [Populus trichocarpa]	3.0e-31	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTU8

Fln msg:

Fln protein: MKFVESKIKGLLRRKSKKSRSNGEGGSGEESTSSRSGSSHSLSSFSKSPVETPKSVLSYSAASSSCTLKMSVPQPNNSEIVVCLEDEKGKQTLATTNGKGKGFLLPTATSTGTDFMLPTATSGVDELREVFKVFDADGDGKITKSELGCVLRSLGDDLSEEELALMVEAADKDGDGCIDLQEFISLNTFDAADGTAIAACEGIFPATDDLKDAFRIFDADMDGKISAQELHKVLTSLGDAECTIDDCRQMIRGVDKDGDGFVDFQDFRRMMTTMC*

Protein Length: 277

Fln nts: AATGTTGTAATTCACTGATTCTGCAATT_-_ATGAAGTTCGTGGAGAGTAAGATAAAGGGGTTGTTGAGGAGAAAATCGAAAAAGTCGAGATCCAATGGGGAAGGGGGATCCGGGGAGGAATCGACCTCATCACGTTCCGGATCTTCGCACTCGCTATCATCTTTCTCGAAGAGCCCCGTGGAAACCCCAAAGAGCGTTCTTTCTTACTCTGCTGCCTCCTCTTCGTGCACCCTCAAGATGTCGGTGCCCCAGCCCAACAACTCAGAGATAGTGGTTTGCCTGGAAGATGAAAAGGGGAAACAAACCCTGGCCACGACCAACGGTAAAGGCAAAGGTTTCCTGCTTCCCACGGCCACGAGCACCGGCACCGACTTCATGCTGCCCACGGCCACGAGCGGCGTGGACGAGCTGAGGGAGGTTTTCAAGGTATTTGACGCCGATGGCGACGGAAAGATCACGAAATCGGAGCTCGGCTGCGTCCTGCGGAGCCTGGGCGACGATCTTTCCGAGGAGGAGTTGGCCCTCATGGTTGAGGCCGCCGATAAAGACGGTGACGGCTGCATCGATCTTCAAGAATTCATCTCCCTCAACACTTTTGACGCGGCCGACGGTACCGCCATTGCCGCCTGCGAAGGCATATTCCCCGCCACGGATGACCTTAAGGACGCGTTTCGCATCTTTGACGCCGACATGGACGGAAAAATTTCGGCGCAAGAACTTCACAAGGTCCTTACAAGCCTCGGAGACGCAGAGTGCACCATTGACGATTGCCGTCAGATGATCAGAGGAGTCGACAAGGACGGCGATGGCTTCGTCGATTTTCAAGATTTCCGGAGGATGATGACGACGATGTGCTGA___GATTAGGGTTCTGTAGCGTATTTTTGGGGGTTTTTACAGATCAGATCTTGGTTTCTTGAAATGGTGTCTAGATGAGCTTGCAGTACCATATACCTAGCAGCACCATTCAATCAATCAATCGTTGCTGCAGGAGAAATCGAAGCCAGAGCTGGAAGCCGAAACGTAGGGCTAAGCAATAAGTATCATCAACAATTTGGATATTAGGGGGAGCGGGCACCCCGGCACCCCGGCCACAGCCACTCTTAGGCTTTTATTTTGCGTTGCGTGGCGAGGCGTAGATGCTCTTCTAGCAGTTCACTCGTGTGAAGCAAGTAGGGTCGTTGTCATAATGAAATGAAATAAGCCCGGCTATGCTTTCATATAAATGTATTATTAAATAATATAATATTGTGATAGGTAGTAGTATTGTGCGACTTGAATCATTATCTATTTTCTGTACCGTGCTTGGCACACAATCAATGGAATGGGTGCCTTCTCTTTCTCAAGAAAATGTGTCTGTCTATATATAAATGAATGATTATTTTGCATCCAACTTTGAAAATGGATTGACCTACCTTTA

Fln Alignment:

Contig11450___TLKMSVPQPNNSEIVVCLEDEKGKQTLATTNGKGKGFLLPTATSTGTDFMLPTATSGVDELREVFKVFDADGDGKITKSELGCVLRSLGDDLSEEELALMVEAADKDGDGCIDLQEFISLNTFDAADGTAIAACEGIFPATDDLKDAFRIFDADMDGKISAQELHKVLTSLGDAECTIDDCRQMIXXXXXXXXXXXXXXXXXXMMTTMC
A9NTU8_______________TFKESAPRPKTGEIV-SLEEEKGKQALGTSNGNG--------------FLLPTATNGVDELREVFKVFDADGDGKITITELGCVLRSLGDDLSEEELALMVQAADKDGDGSIDLDEFISLNT-AAADAAEFSASAGVFPATDDLHDAFRIFDADKDGKISAQELHRVLTSLGDAECTIDDCRQMIRGVDKNGDGYVDFQDFSTMMTTMC

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
18	75		25		0.996473
103		16	83		0.994512
1074		80		20	0.995493
1082	75	25			0.996473
1322		5	94		1.0
1329		3		96	0.988113
1338	3	7	1	86	1.0
1339	6	90			0.999997

SSRs (tot: 1)

Start position	End position	Sequence	Length
963	976	TCAA TCAA TCAA TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain