SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11429

Length: 772 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11429

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-forming enzyme n=1 Tax=Picea glauca RepID=Q40839_PICGL	-	-	2.0e-15	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21420.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr3:7541579-7543221 FORWARD LENGTH=364	8.0e-16	52%
RefSeq	Arabidopsis thaliana	NP_566685.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	1.0e-15	52%
RefSeq	Populus trichocarpa	XP_002315563.1	predicted protein [Populus trichocarpa]	2.0e-16	48%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
136	66		33		1.0
175	12		87		0.992554
179		87		12	0.992554
190		85		14	0.993533
244	12	87			0.992554
322		87		12	0.992554
372		88		11	0.923564
386		11		88	0.923564
389			88	11	0.923564
407		87	12		0.992554
431		77		22	0.999999
470			44	55	1.0
473		44	55		1.0
479	11	88			0.923564
521		87		12	0.992554
522		87		12	0.992554
542	12		87		0.992554
669	10			90	0.90298
670		10	90		0.90298
672			90	10	0.90298
685	12		87		0.992554
686		12		87	0.992554
687	12		87		0.992554
688	85			14	0.993533
689	85			14	0.993533
692	16		83		0.994512
693		16		83	0.994512
694	16		83		0.994512
696		83		16	0.994512
738	33			66	0.997452
740			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain