SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11425

Length: 1761 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11425

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRM7_PHYPA	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Ebs-bah-phd domain-containing protein	-	-	1.137e-14	-

Source	Gene names
Sma3	AT4g04260; AT4g22140; AT4g39100; At4g22140; At4g39100; CHLREDRAFT_193681; EBP1501; EBP1502; EBP1503; EBP1504; EBP1505; EBP1506; EBP901; EBP902; EBP903; EBP904; EBP905; EBP906; ES43; F19H22.200; LOC_Os03g58530; MICPUCDRAFT_30544; MICPUN_77910; OJ1339_B08.1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H3	IPR000164	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G22140.1	EBS PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein chr4:11728556-11730230 REVERSE LENGTH=234	70%
RefSeq	Arabidopsis thaliana	NP_001031695.1	PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002321145.1	ebs-bah-phd domain-containing protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABY9

Fln msg:

Fln protein: MVDSRELQVSYTKFRSAAMAKSRPTKKILDSYTIKGTDKVVKVGDCVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSPPPEQKQPEPKRRKMHHKK*

Protein Length: 241

Fln nts: ATGGGGAATTTTCACTTCCCAATTTGCCAGTCCTTTCCCACCTTTTCCCTCCTCCCTCCGTCAACCGCCGTACTTTTAACATTTCTGCGCTCGCTTCCCGTCAAATGCCGTGCATTCCCGTTTATGCTGACCCTTTGTCGTTGCCGCTGCTGATATCCGCGTTATCATCGCACAGTCGTGGGATCGATCCGCGTTGATTCGGAACCTCCTTCAGGGTTTGGACCTGGTAAGGAAGTACAGAAAGCTCGCCCTATTGTTCGCCCGCTTCGAGTTTCGAAAGGTTGATCTCGTCGCACTCCATCGTCAAGCTCGTTTGTCGTTCGCCTGCCTCGTTTCAGGCGCCTGTAGAATTTAAAAGGAAAGCTCGCAGACAGACAGACAGAAATACGCCCTAGGGTTTCATTGGCTCTTAGTCGCCCGCGGACAATGGCGGACATATAGATAGATAAATACGTGGTCGCTTGCATTTATTTTCACCGGAAAAGCACGCAGGCGGGATATCCACGAGCGTCGT_-_ATGGTCGATTCTCGGGAGCTCCAAGTCTCGTATACAAAATTTCGATCTGCAGCGATGGCGAAATCCAGGCCGACGAAAAAAATCTTGGACTCATACACTATCAAGGGAACCGACAAGGTCGTCAAAGTCGGGGACTGTGTGGTAATGCGTGCGGAGGATGCCCAGAAGCCACCGTATATAGCTAGGGTGGAGAAGATAGAAGCCGATGGCCGGGGAAACCATGTGAGGGTCCGTGTGCGCTGGTATTATCGGCCGGAGGAGTCCATAGGAGGCCGTCGCCAATTCCACGGCGCGAAGGAGCTTTTCCTTTCGGATCATTTCGACGAGCAAAGCGCCGATACAATTGAGGGCAAATGTAGTGTGCATACTTTCAAGAACTACACCAAACTGGATAGCGTCGGCTCCGAAGACTATTTCTGCCGTTTTGAATACAACGCCGCAACTGGAGGGTTCACTCCCGATAGGGTGGCCGTGCACTGCAAATGTGAAATGCCGTACAACCCTGATGTTTTAATGGCTCAGTGCGAAGCATGCAAGGATTGGTTCCATCCTCCATGTGTGAATTTAACGACTGAACAAGTTAAAAAGATGGACCATTTCTTCTGCTCAGATTGTATAAAGGAAGACGATATGAAACTTCGTAATTCTGGAAAAGATTCACCTCCTCCTGAACAAAAGCAACCAGAGCCCAAACGACGAAAAATGCATCATAAGAAGTGA___TTGTTTTCCAGAAGGATCCTTCAAATCATGAGATTAAGTGTAGGTTACATTGAACTTTTGGAGAGGCCTGAGCTGCTACATCATGTGTAGGTGGAAGCAGAATGTTTATAAAGTTCAAACTTTTTGAAATTTACCCAAGTTTGTCTGTGGACAGCATAATGAAAAACAAGTGCTACCTTTCTCCTCCTGTTCATGACTGGATTTTTGGTACTTTTTATTTATTATAGATCGTTTGACATGGCGATGTGGCTGTTTGATAGGAGCCGATTTATAACCATGAGAACTGGGCAGTTTAGGAGACTCCAACTGAATGTTGAGATTGTAAAGAGGATATCTTGGAGCAGATTGTAAATCTATTATATTTGGGGGAAATAAGGATATTTATAATTAGAAGAATGGTAAAGTTTTAAACGTTTTCATTACCTTTTATATCTTAACTTTGCAGGAAACTCGAGTGGTATTTTGCTGTTATACACATCCTTCTGATTATACCCAAATATGATAATCAAGTTAAATTTATTTCTGCC

Fln Alignment:

Contig11425___MAKSRPTKKILDSYTIKGTDKVVKVGDCVVMRAEDAQKPPYIARVEKIEADGRGNHVRVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSXXXXXXXXXXXXXXMHHKK
D5ABY9_______________MAKSKPMKKVLDSYTIKGTDKVVKVGDCVVLRAEDAQKPPYIARVEKIEADGRGNHVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHFDEQSADTIEGKCSVHTFKNYTKLDSVGSEDYFCRFEYNAATGGFTPDRVAVHCKCEMPYNPDVLMAQCEACKDWFHPPCVNLTTEQVKKMDHFFCSDCIKEDDMKLRNSGKDSPPLEQKHPETKRRKLHHKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
786	10		90		0.90298
870	88			11	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
368	383	CAGA CAGA CAGA CAGA	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain